C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00041N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168916-ENSG00000155324 CGP 9606 5:124636913-126496494
GeneTranscriptPositionBiotype
ENSG00000155324 (GRAMD3)
GRAM domain containing 3 		ENST00000285689 (GRAMD3-001) 126423146-126494371 protein_coding
ENST00000502348 (GRAMD3-007) 126462345-126493005 protein_coding
ENST00000503702 (GRAMD3-014) 126492938-126496494 processed_transcript
ENST00000504859 (GRAMD3-013) 126472238-126483646 retained_intron
ENST00000505441 (GRAMD3-011) 126465152-126472305 retained_intron
ENST00000505720 (GRAMD3-016) 126423472-126469725 processed_transcript
ENST00000506445 (GRAMD3-009) 126371313-126483549 protein_coding
ENST00000508523 (GRAMD3-012) 126480017-126483549 retained_intron
ENST00000509882 (GRAMD3-018) 126465146-126477783 processed_transcript
ENST00000511134 (GRAMD3-008) 126465155-126493202 protein_coding
ENST00000512579 (GRAMD3-017) 126480094-126485752 processed_transcript
ENST00000513040 (GRAMD3-002) 126360132-126493608 protein_coding
ENST00000513913 (GRAMD3-015) 126423409-126469730 processed_transcript
ENST00000513978 (GRAMD3-005) 126423472-126493326 nonsense_mediated_decay
ENST00000514099 (GRAMD3-006) 126423472-126493166 nonsense_mediated_decay
ENST00000514932 (GRAMD3-010) 126423406-126472304 processed_transcript
ENST00000515200 (GRAMD3-004) 126423146-126494371 protein_coding
ENST00000542322 (GRAMD3-201) 126423177-126494161 protein_coding
ENST00000544396 (GRAMD3-202) 126423177-126494161 protein_coding
ENSG00000168916 (ZNF608)
zinc finger protein 608 		ENST00000306315 (ZNF608-001) 124636917-124745425 protein_coding
ENST00000503896 (ZNF608-007) 124643511-124744367 processed_transcript
ENST00000504926 (ZNF608-002) 124636916-124744521 protein_coding
ENST00000505686 (ZNF608-003) 124637278-124745081 nonsense_mediated_decay
ENST00000509799 (ZNF608-004) 124648237-124748807 protein_coding
ENST00000511308 (ZNF608-009) 124666271-124701269 processed_transcript
ENST00000512940 (ZNF608-008) 124744656-124746074 processed_transcript
ENST00000513985 (ZNF608-006) 124636913-124644337 processed_transcript
ENST00000513986 (ZNF608-005) 124648263-124746627 protein_coding
ENST00000613878 (ZNF608-201) 124636917-124745112 protein_coding
ENSG00000222107 (RN7SKP117)
RNA, 7SK small nuclear pseudogene 117 		ENST00000410175 (RN7SKP117-201) 125350868-125351131 misc_RNA
ENSG00000242814 (RP11-436H11.1)
 ENST00000464124 (RP11-436H11.1-001) 124808828-124809233 processed_pseudogene
ENSG00000248107 (CTC-339D2.1)
 ENST00000507428 (CTC-339D2.1-001) 126179577-126193850 lincRNA
ENSG00000248443 (RP11-284A20.3)
 ENST00000511091 (RP11-284A20.3-001) 124829472-124830290 lincRNA
ENSG00000248752 (RP11-114J13.1)
 ENST00000450613 (RP11-114J13.1-001) 126076800-126279801 lincRNA
ENSG00000249112 (RP11-43D2.2)
 ENST00000515092 (RP11-43D2.2-001) 124707827-124710737 antisense
ENSG00000249261 (RP11-284A20.2)
 ENST00000510242 (RP11-284A20.2-001) 124868972-124869914 lincRNA
ENSG00000249365 (RP11-508M8.1)
 ENST00000512965 (RP11-508M8.1-001) 125108204-125149929 lincRNA
ENSG00000249423 (RP11-284A20.1)
 ENST00000509456 (RP11-284A20.1-001) 124919947-124921598 lincRNA
ENSG00000249677 (RP11-395P13.3)
 ENST00000502275 (RP11-395P13.3-001) 125370165-125370924 lincRNA
ENSG00000249932 (RP11-395P13.2)
 ENST00000507341 (RP11-395P13.2-001) 125368568-125369149 lincRNA
ENSG00000250194 (RP11-257I8.1)
 ENST00000508858 (RP11-257I8.1-001) 125074665-125074980 processed_pseudogene
ENSG00000250269 (RP11-395P13.5)
 ENST00000511583 (RP11-395P13.5-001) 125382859-125383455 lincRNA
ENSG00000250402 (RP11-395P13.4)
 ENST00000511631 (RP11-395P13.4-001) 125376834-125377439 lincRNA
ENSG00000250411 (RP11-257I8.2)
 ENST00000513915 (RP11-257I8.2-001) 125036831-125042239 lincRNA
ENSG00000250602 (RP11-517I3.1)
 ENST00000512500 (RP11-517I3.1-002) 126480411-126490371 antisense
ENST00000512779 (RP11-517I3.1-003) 126458787-126467631 antisense
ENST00000515808 (RP11-517I3.1-001) 126433505-126490352 antisense
ENSG00000250721 (HMGB1P22)
high mobility group box 1 pseudogene 22 		ENST00000505315 (HMGB1P22-001) 125265528-125265651 processed_pseudogene
ENSG00000251456 (RP11-436H11.5)
 ENST00000507630 (RP11-436H11.5-001) 124734618-124735175 sense_intronic
ENSG00000251554 (RP11-395P13.6)
 ENST00000509010 (RP11-395P13.6-001) 125395379-125395980 lincRNA
ENSG00000260192 (RP11-756H20.1)
 ENST00000564199 (RP11-756H20.1-001) 125493261-125602227 lincRNA
ENSG00000265637 (AC010235.1)
 ENST00000584545 (AC010235.1-201) 126196835-126196915 miRNA
ENSG00000279118 (RP11-517I3.2)
 ENST00000624769 (RP11-517I3.2-001) 126496279-126498604 TEC
CIL_00041N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000052713-ENSMUSG00000001700 CGP 10090 18:54888045-56503792
GeneTranscriptPositionBiotype
ENSMUSG00000001700 (Gramd3)
GRAM domain containing 3 		ENSMUST00000070166 (Gramd3-201) 56432132-56503792 protein_coding
ENSMUSG00000052713 (Zfp608)
zinc finger protein 608 		ENSMUST00000064763 (Zfp608-201) 54888045-54990180 protein_coding
ENSMUSG00000088617 (Gm22484)
predicted gene, 22484 		ENSMUST00000157992 (Gm22484-201) 55987222-55987527 misc_RNA
ENSMUSG00000092702 (Gm24514)
predicted gene, 24514 		ENSMUST00000174961 (Gm24514-201) 55622636-55622920 misc_RNA
ENSMUSG00000096948 (Gm4221)
predicted gene 4221 		ENSMUST00000181538 (Gm4221-201) 54990310-55077337 lincRNA
ENSMUST00000181765 (Gm4221-202) 55057585-55079414 lincRNA
ENSMUSG00000097707 (Gm26742)
predicted gene, 26742 		ENSMUST00000181829 (Gm26742-201) 54981435-54987689 lincRNA
ENSMUSG00000098007 (Gm8614)
predicted gene 8614 		ENSMUST00000182528 (Gm8614-001) 55837972-55838949 processed_pseudogene
ENSMUSG00000098119 (Gm26959)
predicted gene, 26959 		ENSMUST00000182376 (Gm26959-001) 55745251-55746228 processed_pseudogene
ENSMUSG00000098141 (Gm6944)
predicted gene 6944 		ENSMUST00000182449 (Gm6944-001) 55972286-55973291 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000155324 ENST00000285689 N/A N/A 1.130±0.00 2.425±0.00 N/A N/A N/A N/A N/A N/A N/A 3.621±0.82 11.211±0.00 N/A
ENST00000502348 N/A N/A N/A N/A N/A 2.997±0.00 N/A N/A 1.335±0.00 N/A N/A N/A N/A N/A
ENST00000503702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504859 N/A N/A N/A N/A N/A N/A N/A N/A 3.600±0.00 N/A N/A N/A N/A N/A
ENST00000505441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.145±0.00 N/A N/A N/A
ENST00000505720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506445 N/A N/A N/A N/A N/A 2.301±0.00 N/A 1.305±0.00 N/A N/A N/A N/A N/A N/A
ENST00000508523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511134 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512579 N/A N/A N/A 10.321±0.00 N/A N/A N/A N/A 4.397±0.00 5.383±0.00 N/A N/A N/A N/A
ENST00000513040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.00 2.720±0.00 N/A N/A
ENST00000513913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513978 N/A N/A N/A 7.420±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514099 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.783±0.00 N/A N/A N/A N/A
ENST00000514932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515200 N/A N/A N/A N/A N/A N/A N/A N/A 0.842±0.00 0.911±0.00 N/A N/A N/A N/A
ENST00000542322 N/A 2.647±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.922±0.00
ENST00000544396 3.889±0.00 N/A 1.205±0.00 10.976±0.00 3.413±0.00 4.274±1.61 N/A 4.560±4.05 1.657±0.00 4.250±0.00 0.486±0.00 6.237±4.94 4.367±0.81 0.948±0.20
ENSG00000168916 ENST00000306315 0.233±0.00 N/A N/A 0.738±0.00 N/A N/A N/A N/A N/A N/A N/A 0.446±0.00 N/A N/A
ENST00000503896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504926 0.399±0.00 0.953±0.00 0.857±0.00 1.227±0.69 0.691±0.00 1.085±0.00 0.433±0.24 1.387±0.00 0.107±0.00 0.944±0.00 1.830±0.00 1.396±0.79 0.700±0.50 7.068±3.18
ENST00000505686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509799 N/A N/A N/A N/A N/A N/A 0.188±0.00 N/A N/A N/A N/A 0.811±0.00 N/A N/A
ENST00000511308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513985 N/A N/A N/A 2.319±0.00 0.628±0.00 N/A N/A 0.838±0.00 0.295±0.00 N/A 0.239±0.00 N/A N/A N/A
ENST00000513986 N/A N/A 1.703±0.00 N/A N/A 1.714±0.00 N/A N/A N/A 2.047±0.00 N/A N/A N/A N/A
ENST00000613878 N/A N/A N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A N/A 0.541±0.00 0.183±0.00 N/A
ENSG00000222107 ENST00000410175 N/A N/A N/A N/A N/A 2.054±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242814 ENST00000464124 1.553±0.00 1.396±0.00 N/A 0.455±0.00 0.802±0.00 1.526±0.00 0.369±0.00 0.292±0.00 0.248±0.00 0.499±0.00 0.522±0.00 0.705±0.00 0.090±0.00 0.826±0.26
ENSG00000248107 ENST00000507428 N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A 0.512±0.14
ENSG00000248443 ENST00000511091 N/A 0.090±0.00 N/A 0.013±0.00 0.024±0.00 0.034±0.00 0.111±0.00 0.075±0.00 0.044±0.00 N/A N/A 0.046±0.00 N/A 0.036±0.00
ENSG00000248752 ENST00000450613 N/A N/A 0.796±0.00 N/A 0.097±0.00 0.089±0.00 0.396±0.00 N/A N/A N/A N/A N/A N/A 0.792±0.00
ENSG00000249112 ENST00000515092 N/A 0.028±0.00 N/A 0.057±0.00 N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A 0.116±0.10
ENSG00000249261 ENST00000510242 N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A 0.501±0.00
ENSG00000249365 ENST00000512965 N/A N/A N/A N/A 0.396±0.00 N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A 0.150±0.04
ENSG00000249423 ENST00000509456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.705±0.17
ENSG00000249677 ENST00000502275 N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000249932 ENST00000507341 0.015±0.00 0.211±0.00 N/A 0.229±0.00 0.151±0.00 0.158±0.00 0.056±0.00 0.080±0.00 0.024±0.00 0.148±0.00 N/A 0.039±0.00 N/A 0.013±0.00
ENSG00000250194 ENST00000508858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.177±0.00
ENSG00000250269 ENST00000511583 N/A N/A N/A N/A N/A N/A 0.163±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000250402 ENST00000511631 0.017±0.00 N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.602±0.29
ENSG00000250411 ENST00000513915 N/A 0.723±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.345±0.09
ENSG00000250602 ENST00000512500 N/A 4.144±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000250721 ENST00000505315 N/A N/A N/A N/A N/A N/A N/A 0.137±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000251456 ENST00000507630 N/A N/A 0.410±0.00 0.032±0.00 0.317±0.00 N/A N/A N/A 0.332±0.00 2.442±0.00 N/A N/A N/A N/A
ENSG00000251554 ENST00000509010 0.065±0.00 0.662±0.00 N/A 0.275±0.00 0.084±0.00 0.020±0.00 0.177±0.00 0.233±0.00 N/A N/A 0.037±0.00 0.086±0.00 N/A 0.296±0.00
ENSG00000260192 ENST00000564199 N/A N/A N/A 0.007±0.00 N/A N/A N/A N/A N/A 0.012±0.00 0.271±0.00 N/A N/A N/A
ENSG00000265637 ENST00000584545 N/A N/A N/A N/A N/A N/A 1.811±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000279118 ENST00000624769 2.268±0.00 1.444±0.00 N/A 6.136±2.12 0.965±0.37 N/A 2.563±0.00 2.025±1.15 0.810±0.28 1.186±0.47 0.367±0.16 1.683±0.00 N/A 0.934±0.14
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001700 ENSMUST00000070166 5.714±0.46 2.247±0.51 8.291±0.69 2.305±0.17 3.564±0.90 10.648±2.61 3.926±0.98 6.085±0.76 4.635±2.63 2.633±0.22 3.757±0.36 4.376±1.53 8.737±2.14 2.823±1.33
ENSMUSG00000052713 ENSMUST00000064763 2.362±0.57 1.193±0.54 1.230±0.54 6.779±3.18 2.206±0.65 2.820±0.24 1.362±0.27 1.771±0.63 0.366±0.24 6.307±1.44 0.726±0.09 2.241±0.85 1.213±0.84 N/A
ENSMUSG00000088617 ENSMUST00000157992 N/A N/A N/A 0.056±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092702 ENSMUST00000174961 1.909±1.10 0.268±0.00 N/A N/A N/A 0.620±0.06 N/A 0.664±0.41 0.389±0.33 N/A N/A N/A N/A 0.273±0.00
ENSMUSG00000096948 ENSMUST00000181538 0.265±0.07 0.347±0.13 0.082±0.02 0.118±0.04 0.384±0.24 0.176±0.09 0.124±0.04 0.117±0.07 0.050±0.04 0.542±0.38 N/A 0.377±0.27 0.056±0.03 0.130±0.09
ENSMUST00000181765 0.030±0.01 0.458±0.23 0.024±0.00 0.011±0.00 0.028±0.00 N/A 0.022±0.00 N/A 0.006±0.00 0.080±0.04 0.006±0.00 0.101±0.15 0.011±0.00 0.063±0.03
ENSMUSG00000097707 ENSMUST00000181829 N/A N/A N/A N/A N/A N/A N/A N/A 0.077±0.01 N/A N/A N/A N/A N/A
ENSMUSG00000098007 ENSMUST00000182528 N/A N/A N/A 0.064±0.01 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A 0.088±0.02 0.038±0.00
ENSMUSG00000098119 ENSMUST00000182376 N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098141 ENSMUST00000182449 0.035±0.00 N/A 0.022±0.01 0.060±0.05 0.248±0.27 0.111±0.00 0.122±0.00 0.065±0.01 0.037±0.01 0.041±0.00 N/A 0.167±0.06 0.078±0.10 0.033±0.00

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