C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00041N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000168916-ENSG00000155324 CGP 9606 5:124636913-126496494
GeneTranscriptPositionBiotype
ENSG00000155324 (GRAMD3)
GRAM domain containing 3 		ENST00000285689 (GRAMD3-001) 126423146-126494371 protein_coding
ENST00000502348 (GRAMD3-007) 126462345-126493005 protein_coding
ENST00000503702 (GRAMD3-014) 126492938-126496494 processed_transcript
ENST00000504859 (GRAMD3-013) 126472238-126483646 retained_intron
ENST00000505441 (GRAMD3-011) 126465152-126472305 retained_intron
ENST00000505720 (GRAMD3-016) 126423472-126469725 processed_transcript
ENST00000506445 (GRAMD3-009) 126371313-126483549 protein_coding
ENST00000508523 (GRAMD3-012) 126480017-126483549 retained_intron
ENST00000509882 (GRAMD3-018) 126465146-126477783 processed_transcript
ENST00000511134 (GRAMD3-008) 126465155-126493202 protein_coding
ENST00000512579 (GRAMD3-017) 126480094-126485752 processed_transcript
ENST00000513040 (GRAMD3-002) 126360132-126493608 protein_coding
ENST00000513913 (GRAMD3-015) 126423409-126469730 processed_transcript
ENST00000513978 (GRAMD3-005) 126423472-126493326 nonsense_mediated_decay
ENST00000514099 (GRAMD3-006) 126423472-126493166 nonsense_mediated_decay
ENST00000514932 (GRAMD3-010) 126423406-126472304 processed_transcript
ENST00000515200 (GRAMD3-004) 126423146-126494371 protein_coding
ENST00000542322 (GRAMD3-201) 126423177-126494161 protein_coding
ENST00000544396 (GRAMD3-202) 126423177-126494161 protein_coding
ENSG00000168916 (ZNF608)
zinc finger protein 608 		ENST00000306315 (ZNF608-001) 124636917-124745425 protein_coding
ENST00000503896 (ZNF608-007) 124643511-124744367 processed_transcript
ENST00000504926 (ZNF608-002) 124636916-124744521 protein_coding
ENST00000505686 (ZNF608-003) 124637278-124745081 nonsense_mediated_decay
ENST00000509799 (ZNF608-004) 124648237-124748807 protein_coding
ENST00000511308 (ZNF608-009) 124666271-124701269 processed_transcript
ENST00000512940 (ZNF608-008) 124744656-124746074 processed_transcript
ENST00000513985 (ZNF608-006) 124636913-124644337 processed_transcript
ENST00000513986 (ZNF608-005) 124648263-124746627 protein_coding
ENST00000613878 (ZNF608-201) 124636917-124745112 protein_coding
ENSG00000222107 (RN7SKP117)
RNA, 7SK small nuclear pseudogene 117 		ENST00000410175 (RN7SKP117-201) 125350868-125351131 misc_RNA
ENSG00000242814 (RP11-436H11.1)
 ENST00000464124 (RP11-436H11.1-001) 124808828-124809233 processed_pseudogene
ENSG00000248107 (CTC-339D2.1)
 ENST00000507428 (CTC-339D2.1-001) 126179577-126193850 lincRNA
ENSG00000248443 (RP11-284A20.3)
 ENST00000511091 (RP11-284A20.3-001) 124829472-124830290 lincRNA
ENSG00000248752 (RP11-114J13.1)
 ENST00000450613 (RP11-114J13.1-001) 126076800-126279801 lincRNA
ENSG00000249112 (RP11-43D2.2)
 ENST00000515092 (RP11-43D2.2-001) 124707827-124710737 antisense
ENSG00000249261 (RP11-284A20.2)
 ENST00000510242 (RP11-284A20.2-001) 124868972-124869914 lincRNA
ENSG00000249365 (RP11-508M8.1)
 ENST00000512965 (RP11-508M8.1-001) 125108204-125149929 lincRNA
ENSG00000249423 (RP11-284A20.1)
 ENST00000509456 (RP11-284A20.1-001) 124919947-124921598 lincRNA
ENSG00000249677 (RP11-395P13.3)
 ENST00000502275 (RP11-395P13.3-001) 125370165-125370924 lincRNA
ENSG00000249932 (RP11-395P13.2)
 ENST00000507341 (RP11-395P13.2-001) 125368568-125369149 lincRNA
ENSG00000250194 (RP11-257I8.1)
 ENST00000508858 (RP11-257I8.1-001) 125074665-125074980 processed_pseudogene
ENSG00000250269 (RP11-395P13.5)
 ENST00000511583 (RP11-395P13.5-001) 125382859-125383455 lincRNA
ENSG00000250402 (RP11-395P13.4)
 ENST00000511631 (RP11-395P13.4-001) 125376834-125377439 lincRNA
ENSG00000250411 (RP11-257I8.2)
 ENST00000513915 (RP11-257I8.2-001) 125036831-125042239 lincRNA
ENSG00000250602 (RP11-517I3.1)
 ENST00000512500 (RP11-517I3.1-002) 126480411-126490371 antisense
ENST00000512779 (RP11-517I3.1-003) 126458787-126467631 antisense
ENST00000515808 (RP11-517I3.1-001) 126433505-126490352 antisense
ENSG00000250721 (HMGB1P22)
high mobility group box 1 pseudogene 22 		ENST00000505315 (HMGB1P22-001) 125265528-125265651 processed_pseudogene
ENSG00000251456 (RP11-436H11.5)
 ENST00000507630 (RP11-436H11.5-001) 124734618-124735175 sense_intronic
ENSG00000251554 (RP11-395P13.6)
 ENST00000509010 (RP11-395P13.6-001) 125395379-125395980 lincRNA
ENSG00000260192 (RP11-756H20.1)
 ENST00000564199 (RP11-756H20.1-001) 125493261-125602227 lincRNA
ENSG00000265637 (AC010235.1)
 ENST00000584545 (AC010235.1-201) 126196835-126196915 miRNA
ENSG00000279118 (RP11-517I3.2)
 ENST00000624769 (RP11-517I3.2-001) 126496279-126498604 TEC

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
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CIL_00041N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000052713-ENSMUSG00000001700 CGP 10090 18:54888045-56503792
GeneTranscriptPositionBiotype
ENSMUSG00000001700 (Gramd3)
GRAM domain containing 3 		ENSMUST00000070166 (Gramd3-201) 56432132-56503792 protein_coding
ENSMUSG00000052713 (Zfp608)
zinc finger protein 608 		ENSMUST00000064763 (Zfp608-201) 54888045-54990180 protein_coding
ENSMUSG00000088617 (Gm22484)
predicted gene, 22484 		ENSMUST00000157992 (Gm22484-201) 55987222-55987527 misc_RNA
ENSMUSG00000092702 (Gm24514)
predicted gene, 24514 		ENSMUST00000174961 (Gm24514-201) 55622636-55622920 misc_RNA
ENSMUSG00000096948 (Gm4221)
predicted gene 4221 		ENSMUST00000181538 (Gm4221-201) 54990310-55077337 lincRNA
ENSMUST00000181765 (Gm4221-202) 55057585-55079414 lincRNA
ENSMUSG00000097707 (Gm26742)
predicted gene, 26742 		ENSMUST00000181829 (Gm26742-201) 54981435-54987689 lincRNA
ENSMUSG00000098007 (Gm8614)
predicted gene 8614 		ENSMUST00000182528 (Gm8614-001) 55837972-55838949 processed_pseudogene
ENSMUSG00000098119 (Gm26959)
predicted gene, 26959 		ENSMUST00000182376 (Gm26959-001) 55745251-55746228 processed_pseudogene
ENSMUSG00000098141 (Gm6944)
predicted gene 6944 		ENSMUST00000182449 (Gm6944-001) 55972286-55973291 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000155324 ENST00000285689 N/A N/A 1.130±0.00 2.425±0.00 N/A N/A N/A N/A N/A N/A N/A 3.621±0.82 11.211±0.00 N/A
ENST00000502348 N/A N/A N/A N/A N/A 2.997±0.00 N/A N/A 1.335±0.00 N/A N/A N/A N/A N/A
ENST00000503702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504859 N/A N/A N/A N/A N/A N/A N/A N/A 3.600±0.00 N/A N/A N/A N/A N/A
ENST00000505441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.145±0.00 N/A N/A N/A
ENST00000505720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506445 N/A N/A N/A N/A N/A 2.301±0.00 N/A 1.305±0.00 N/A N/A N/A N/A N/A N/A
ENST00000508523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511134 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512579 N/A N/A N/A 10.321±0.00 N/A N/A N/A N/A 4.397±0.00 5.383±0.00 N/A N/A N/A N/A
ENST00000513040 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.00 2.720±0.00 N/A N/A
ENST00000513913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513978 N/A N/A N/A 7.420±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514099 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.783±0.00 N/A N/A N/A N/A
ENST00000514932 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515200 N/A N/A N/A N/A N/A N/A N/A N/A 0.842±0.00 0.911±0.00 N/A N/A N/A N/A
ENST00000542322 N/A 2.647±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.922±0.00
ENST00000544396 3.889±0.00 N/A 1.205±0.00 10.976±0.00 3.413±0.00 4.274±1.61 N/A 4.560±4.05 1.657±0.00 4.250±0.00 0.486±0.00 6.237±4.94 4.367±0.81 0.948±0.20
ENSG00000168916 ENST00000306315 0.233±0.00 N/A N/A 0.738±0.00 N/A N/A N/A N/A N/A N/A N/A 0.446±0.00 N/A N/A
ENST00000503896 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504926 0.399±0.00 0.953±0.00 0.857±0.00 1.227±0.69 0.691±0.00 1.085±0.00 0.433±0.24 1.387±0.00 0.107±0.00 0.944±0.00 1.830±0.00 1.396±0.79 0.700±0.50 7.068±3.18
ENST00000505686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509799 N/A N/A N/A N/A N/A N/A 0.188±0.00 N/A N/A N/A N/A 0.811±0.00 N/A N/A
ENST00000511308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512940 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513985 N/A N/A N/A 2.319±0.00 0.628±0.00 N/A N/A 0.838±0.00 0.295±0.00 N/A 0.239±0.00 N/A N/A N/A
ENST00000513986 N/A N/A 1.703±0.00 N/A N/A 1.714±0.00 N/A N/A N/A 2.047±0.00 N/A N/A N/A N/A
ENST00000613878 N/A N/A N/A N/A N/A N/A N/A N/A 0.184±0.00 N/A N/A 0.541±0.00 0.183±0.00 N/A
ENSG00000222107 ENST00000410175 N/A N/A N/A N/A N/A 2.054±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000242814 ENST00000464124 1.553±0.00 1.396±0.00 N/A 0.455±0.00 0.802±0.00 1.526±0.00 0.369±0.00 0.292±0.00 0.248±0.00 0.499±0.00 0.522±0.00 0.705±0.00 0.090±0.00 0.826±0.26
ENSG00000248107 ENST00000507428 N/A N/A N/A N/A N/A N/A 0.018±0.00 N/A N/A N/A N/A N/A N/A 0.512±0.14
ENSG00000248443 ENST00000511091 N/A 0.090±0.00 N/A 0.013±0.00 0.024±0.00 0.034±0.00 0.111±0.00 0.075±0.00 0.044±0.00 N/A N/A 0.046±0.00 N/A 0.036±0.00
ENSG00000248752 ENST00000450613 N/A N/A 0.796±0.00 N/A 0.097±0.00 0.089±0.00 0.396±0.00 N/A N/A N/A N/A N/A N/A 0.792±0.00
ENSG00000249112 ENST00000515092 N/A 0.028±0.00 N/A 0.057±0.00 N/A N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A 0.116±0.10
ENSG00000249261 ENST00000510242 N/A N/A N/A N/A N/A N/A 0.010±0.00 N/A N/A N/A N/A N/A N/A 0.501±0.00
ENSG00000249365 ENST00000512965 N/A N/A N/A N/A 0.396±0.00 N/A 0.027±0.00 N/A N/A N/A N/A N/A N/A 0.150±0.04
ENSG00000249423 ENST00000509456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.705±0.17
ENSG00000249677 ENST00000502275 N/A N/A N/A 0.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000249932 ENST00000507341 0.015±0.00 0.211±0.00 N/A 0.229±0.00 0.151±0.00 0.158±0.00 0.056±0.00 0.080±0.00 0.024±0.00 0.148±0.00 N/A 0.039±0.00 N/A 0.013±0.00
ENSG00000250194 ENST00000508858 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.177±0.00
ENSG00000250269 ENST00000511583 N/A N/A N/A N/A N/A N/A 0.163±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000250402 ENST00000511631 0.017±0.00 N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.602±0.29
ENSG00000250411 ENST00000513915 N/A 0.723±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.345±0.09
ENSG00000250602 ENST00000512500 N/A 4.144±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000250721 ENST00000505315 N/A N/A N/A N/A N/A N/A N/A 0.137±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000251456 ENST00000507630 N/A N/A 0.410±0.00 0.032±0.00 0.317±0.00 N/A N/A N/A 0.332±0.00 2.442±0.00 N/A N/A N/A N/A
ENSG00000251554 ENST00000509010 0.065±0.00 0.662±0.00 N/A 0.275±0.00 0.084±0.00 0.020±0.00 0.177±0.00 0.233±0.00 N/A N/A 0.037±0.00 0.086±0.00 N/A 0.296±0.00
ENSG00000260192 ENST00000564199 N/A N/A N/A 0.007±0.00 N/A N/A N/A N/A N/A 0.012±0.00 0.271±0.00 N/A N/A N/A
ENSG00000265637 ENST00000584545 N/A N/A N/A N/A N/A N/A 1.811±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000279118 ENST00000624769 2.268±0.00 1.444±0.00 N/A 6.136±2.12 0.965±0.37 N/A 2.563±0.00 2.025±1.15 0.810±0.28 1.186±0.47 0.367±0.16 1.683±0.00 N/A 0.934±0.14
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001700 ENSMUST00000070166 5.714±0.46 2.247±0.51 8.291±0.69 2.305±0.17 3.564±0.90 10.648±2.61 3.926±0.98 6.085±0.76 4.635±2.63 2.633±0.22 3.757±0.36 4.376±1.53 8.737±2.14 2.823±1.33
ENSMUSG00000052713 ENSMUST00000064763 2.362±0.57 1.193±0.54 1.230±0.54 6.779±3.18 2.206±0.65 2.820±0.24 1.362±0.27 1.771±0.63 0.366±0.24 6.307±1.44 0.726±0.09 2.241±0.85 1.213±0.84 N/A
ENSMUSG00000088617 ENSMUST00000157992 N/A N/A N/A 0.056±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092702 ENSMUST00000174961 1.909±1.10 0.268±0.00 N/A N/A N/A 0.620±0.06 N/A 0.664±0.41 0.389±0.33 N/A N/A N/A N/A 0.273±0.00
ENSMUSG00000096948 ENSMUST00000181538 0.265±0.07 0.347±0.13 0.082±0.02 0.118±0.04 0.384±0.24 0.176±0.09 0.124±0.04 0.117±0.07 0.050±0.04 0.542±0.38 N/A 0.377±0.27 0.056±0.03 0.130±0.09
ENSMUST00000181765 0.030±0.01 0.458±0.23 0.024±0.00 0.011±0.00 0.028±0.00 N/A 0.022±0.00 N/A 0.006±0.00 0.080±0.04 0.006±0.00 0.101±0.15 0.011±0.00 0.063±0.03
ENSMUSG00000097707 ENSMUST00000181829 N/A N/A N/A N/A N/A N/A N/A N/A 0.077±0.01 N/A N/A N/A N/A N/A
ENSMUSG00000098007 ENSMUST00000182528 N/A N/A N/A 0.064±0.01 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A 0.088±0.02 0.038±0.00
ENSMUSG00000098119 ENSMUST00000182376 N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098141 ENSMUST00000182449 0.035±0.00 N/A 0.022±0.01 0.060±0.05 0.248±0.27 0.111±0.00 0.122±0.00 0.065±0.01 0.037±0.01 0.041±0.00 N/A 0.167±0.06 0.078±0.10 0.033±0.00

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