C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00047M_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144061-ENSG00000175701 CGP 9606 2:110122311-110245420
GeneTranscriptPositionBiotype
ENSG00000144061 (NPHP1)
nephronophthisis 1 (juvenile) 		ENST00000316534 (NPHP1-002) 110122311-110205042 protein_coding
ENST00000355301 (NPHP1-004) 110123708-110204972 protein_coding
ENST00000393272 (NPHP1-001) 110123336-110205066 protein_coding
ENST00000417665 (NPHP1-007) 110123708-110204995 protein_coding
ENST00000418527 (NPHP1-003) 110178041-110204999 protein_coding
ENST00000422492 (NPHP1-010) 110125399-110129259 protein_coding
ENST00000445609 (NPHP1-011) 110123336-110204992 protein_coding
ENST00000449600 (NPHP1-008) 110178754-110204961 nonsense_mediated_decay
ENST00000461707 (NPHP1-006) 110123588-110205001 retained_intron
ENST00000493051 (NPHP1-009) 110128952-110144548 retained_intron
ENST00000496524 (NPHP1-005) 110123348-110205017 retained_intron
ENSG00000175701 (LINC00116)
long intergenic non-protein coding RNA 116 		ENST00000414416 (LINC00116-001) 110211529-110245420 protein_coding
ENST00000426713 (LINC00116-002) 110211530-110212823 protein_coding
ENST00000611969 (LINC00116-003) 110211530-110212562 protein_coding
ENSG00000233370 (AC092664.1)
 ENST00000418944 (AC092664.1-001) 110184054-110185179 processed_pseudogene
CIL_00047M_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027378-ENSMUSG00000051319 CGP 10090 2:127740732-127792488
GeneTranscriptPositionBiotype
ENSMUSG00000027378 (Nphp1)
nephronophthisis 1 (juvenile) homolog (human) 		ENSMUST00000028857 (Nphp1-002) 127740732-127788854 protein_coding
ENSMUST00000110357 (Nphp1-001) 127740736-127788897 protein_coding
ENSMUST00000144938 (Nphp1-004) 127740734-127744547 processed_transcript
ENSMUST00000148033 (Nphp1-003) 127745622-127754070 retained_intron
ENSMUSG00000051319 (1500011K16Rik)
RIKEN cDNA 1500011K16 gene 		ENSMUST00000135091 (1500011K16Rik-001) 127791388-127792488 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00047M_0001ENSG00000144061ENST00000316534ENST00000355301ENST00000393272ENST00000417665ENST00000418527ENST00000422492ENST00000445609ENST00000449600ENST00000461707ENST00000493051ENST00000496524ENSG00000175701ENST00000414416ENST00000426713ENST00000611969ENSG00000233370ENST00000418944CIL_00047M_0002ENSMUSG00000027378ENSMUST00000028857ENSMUST00000110357ENSMUST00000144938ENSMUST00000148033ENSMUSG00000051319ENSMUST00000135091
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00047M_0001ENSG00000144061ENST00000316534ENST00000355301ENST00000393272ENST00000417665ENST00000418527ENST00000445609ENST00000461707ENST00000496524ENSG00000175701ENST00000414416ENST00000611969ENSG00000233370ENST00000418944CIL_00047M_0002ENSMUSG00000027378ENSMUST00000028857ENSMUST00000110357ENSMUST00000144938ENSMUST00000148033ENSMUSG00000051319ENSMUST00000135091
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144061 ENST00000316534 N/A 0.206±0.00 N/A N/A N/A N/A 0.140±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000355301 0.638±0.00 0.681±0.00 0.204±0.00 0.690±0.10 1.001±0.66 0.767±0.55 0.323±0.21 0.141±0.00 N/A 1.184±0.00 3.024±0.00 0.721±0.09 0.226±0.03 2.704±0.00
ENST00000393272 N/A N/A N/A 0.194±0.00 N/A N/A 0.088±0.00 N/A N/A N/A 0.186±0.00 0.448±0.00 0.198±0.00 3.078±1.10
ENST00000417665 N/A N/A N/A 0.292±0.00 N/A 0.288±0.09 0.404±0.00 1.392±0.00 0.443±0.00 1.013±0.00 N/A 0.594±0.11 0.174±0.05 5.359±0.19
ENST00000418527 N/A N/A 0.870±0.00 N/A 0.427±0.00 N/A N/A 0.707±0.43 0.191±0.00 N/A N/A 1.450±0.00 0.318±0.04 N/A
ENST00000422492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445609 N/A N/A N/A N/A N/A 0.296±0.00 0.293±0.00 0.543±0.00 N/A 0.518±0.13 0.648±0.00 1.298±0.50 0.167±0.03 N/A
ENST00000449600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461707 0.219±0.00 0.515±0.00 N/A 0.160±0.01 0.610±0.00 0.197±0.00 0.129±0.00 0.381±0.00 0.172±0.11 N/A 0.110±0.00 0.422±0.20 N/A 1.301±0.00
ENST00000493051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496524 N/A N/A 0.098±0.00 0.056±0.00 0.032±0.00 0.045±0.00 0.060±0.00 0.081±0.07 0.041±0.03 0.292±0.00 0.103±0.07 0.253±0.00 0.018±0.00 0.791±0.00
ENSG00000175701 ENST00000414416 N/A N/A 0.265±0.00 N/A N/A N/A N/A N/A 0.179±0.00 N/A N/A N/A N/A 0.713±0.00
ENST00000426713 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000611969 20.626±0.00 39.633±0.00 N/A 17.256±8.36 17.904±17.04 15.558±13.68 23.837±19.59 18.935±17.68 11.991±8.66 11.108±10.56 70.510±11.35 27.596±13.65 22.165±8.18 17.270±11.32
ENSG00000233370 ENST00000418944 N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A 0.035±0.00 N/A 0.115±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027378 ENSMUST00000028857 2.357±0.95 1.313±0.43 2.700±0.72 2.578±0.46 1.369±0.29 0.811±0.26 1.058±0.47 4.720±0.64 0.827±0.38 1.029±0.32 7.921±0.92 4.755±3.91 0.636±0.50 70.738±20.66
ENSMUST00000110357 3.981±0.66 2.770±0.36 6.937±0.01 5.252±1.09 2.449±1.02 0.714±0.35 3.042±0.40 8.131±0.54 1.419±1.01 4.726±0.47 4.496±1.06 5.379±2.03 0.785±0.29 226.186±22.39
ENSMUST00000144938 2.962±0.00 N/A N/A N/A N/A 0.497±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148033 N/A N/A N/A N/A N/A 1.280±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000051319 ENSMUST00000135091 83.289±22.37 95.619±23.19 41.863±5.87 14.559±5.61 75.700±41.13 43.392±6.44 26.587±5.81 50.826±10.93 19.625±3.92 30.210±16.98 49.484±4.16 69.418±40.32 5.719±4.94 3.059±1.67

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