C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nephronophthisis 1 (juvenile)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000461707 NPHP1-006 ENSG00000144061 9606 - 2:110123588-110205001 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryTestisENST00000461707
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Testis
ENST00000461707 0.219±0.00 0.515±0.00 0.160±0.01 0.610±0.00 0.197±0.00 0.129±0.00 0.381±0.00 0.172±0.11 0.110±0.00 0.422±0.20 1.301±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00047N CIL_00047N_0001 CGP 2:110083870-110205066
CIL_00047M CIL_00047M_0001 CGP 2:110122311-110245420

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110357 Nphp1-001 protein_coding Mus_musculus 0 1232
ENSMUST00000028857 Nphp1-002 protein_coding Mus_musculus 0 1218
ENSMUST00000148033 Nphp1-003 retained_intron Mus_musculus 0 217

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