C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nephronophthisis 1 (juvenile)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000496524 NPHP1-005 ENSG00000144061 9606 - 2:110123348-110205017 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000496524
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000496524 0.098±0.00 0.056±0.00 0.032±0.00 0.045±0.00 0.060±0.00 0.081±0.07 0.041±0.03 0.292±0.00 0.103±0.07 0.253±0.00 0.018±0.00 0.791±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00047N CIL_00047N_0001 CGP 2:110083870-110205066
CIL_00047M CIL_00047M_0001 CGP 2:110122311-110245420

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110357 Nphp1-001 protein_coding Mus_musculus 0 743
ENSMUST00000028857 Nphp1-002 protein_coding Mus_musculus 0 728
ENSMUST00000148033 Nphp1-003 retained_intron Mus_musculus 0 244

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