C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nephronophthisis 1 (juvenile) homolog (human)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000110357 Nphp1-001 ENSMUSG00000027378 10090 - 2:127740736-127788897 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000110357
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000110357 3.981±0.66 2.770±0.36 6.937±0.01 5.252±1.09 2.449±1.02 0.714±0.35 3.042±0.40 8.131±0.54 1.419±1.01 4.726±0.47 4.496±1.06 5.379±2.03 0.785±0.29 226.186±22.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00047N CIL_00047N_0002 CGP 2:127704386-127788897
CIL_00047M CIL_00047M_0002 CGP 2:127740732-127792488

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0035869 IDA ciliary transition zone
GO:0097546 IDA ciliary base

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316534 NPHP1-002 protein_coding Homo_sapiens 0 1229
ENST00000355301 NPHP1-004 protein_coding Homo_sapiens 0 1332
ENST00000393272 NPHP1-001 protein_coding Homo_sapiens 0 1223
ENST00000417665 NPHP1-007 protein_coding Homo_sapiens 0 1249
ENST00000445609 NPHP1-011 protein_coding Homo_sapiens 0 1504
ENST00000461707 NPHP1-006 retained_intron Homo_sapiens 0 1232
ENST00000493051 NPHP1-009 retained_intron Homo_sapiens 0 291
ENST00000496524 NPHP1-005 retained_intron Homo_sapiens 0 743

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