C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nephronophthisis 1 (juvenile)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417665 NPHP1-007 ENSG00000144061 9606 - 2:110123708-110204995 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000417665
Transcript ID Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000417665 0.292±0.00 0.288±0.09 0.404±0.00 1.392±0.00 0.443±0.00 1.013±0.00 0.594±0.11 0.174±0.05 5.359±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00047N CIL_00047N_0001 CGP 2:110083870-110205066
CIL_00047M CIL_00047M_0001 CGP 2:110122311-110245420

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000110357 Nphp1-001 protein_coding Mus_musculus 0 1249
ENSMUST00000028857 Nphp1-002 protein_coding Mus_musculus 0 1234
ENSMUST00000148033 Nphp1-003 retained_intron Mus_musculus 0 217

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