C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00047N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000144063-ENSG00000144061 CGP 9606 2:110083870-110205066
GeneTranscriptPositionBiotype
ENSG00000144061 (NPHP1)
nephronophthisis 1 (juvenile) 		ENST00000316534 (NPHP1-002) 110122311-110205042 protein_coding
ENST00000355301 (NPHP1-004) 110123708-110204972 protein_coding
ENST00000393272 (NPHP1-001) 110123336-110205066 protein_coding
ENST00000417665 (NPHP1-007) 110123708-110204995 protein_coding
ENST00000418527 (NPHP1-003) 110178041-110204999 protein_coding
ENST00000422492 (NPHP1-010) 110125399-110129259 protein_coding
ENST00000445609 (NPHP1-011) 110123336-110204992 protein_coding
ENST00000449600 (NPHP1-008) 110178754-110204961 nonsense_mediated_decay
ENST00000461707 (NPHP1-006) 110123588-110205001 retained_intron
ENST00000493051 (NPHP1-009) 110128952-110144548 retained_intron
ENST00000496524 (NPHP1-005) 110123348-110205017 retained_intron
ENSG00000144063 (MALL)
mal, T-cell differentiation protein-like 		ENST00000272462 (MALL-001) 110083870-110116566 protein_coding
ENST00000424988 (MALL-003) 110085712-110115821 nonsense_mediated_decay
ENST00000427178 (MALL-002) 110085023-110116022 protein_coding
ENSG00000233370 (AC092664.1)
 ENST00000418944 (AC092664.1-001) 110184054-110185179 processed_pseudogene
CIL_00047N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027377-ENSMUSG00000027378 CGP 10090 2:127704386-127788897
GeneTranscriptPositionBiotype
ENSMUSG00000027377 (Mall)
mal, T cell differentiation protein-like 		ENSMUST00000028856 (Mall-001) 127704386-127729932 protein_coding
ENSMUSG00000027378 (Nphp1)
nephronophthisis 1 (juvenile) homolog (human) 		ENSMUST00000028857 (Nphp1-002) 127740732-127788854 protein_coding
ENSMUST00000110357 (Nphp1-001) 127740736-127788897 protein_coding
ENSMUST00000144938 (Nphp1-004) 127740734-127744547 processed_transcript
ENSMUST00000148033 (Nphp1-003) 127745622-127754070 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00047N_0001ENSG00000144061ENST00000316534ENST00000355301ENST00000393272ENST00000417665ENST00000418527ENST00000422492ENST00000445609ENST00000449600ENST00000461707ENST00000493051ENST00000496524ENSG00000144063ENST00000272462ENST00000424988ENST00000427178ENSG00000233370ENST00000418944CIL_00047N_0002ENSMUSG00000027377ENSMUST00000028856ENSMUSG00000027378ENSMUST00000028857ENSMUST00000110357ENSMUST00000144938ENSMUST00000148033
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00047N_0001ENSG00000144061ENST00000316534ENST00000355301ENST00000393272ENST00000417665ENST00000418527ENST00000445609ENST00000461707ENST00000496524ENSG00000144063ENST00000272462ENST00000424988ENST00000427178ENSG00000233370ENST00000418944CIL_00047N_0002ENSMUSG00000027377ENSMUST00000028856ENSMUSG00000027378ENSMUST00000028857ENSMUST00000110357ENSMUST00000144938ENSMUST00000148033
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000144061 ENST00000316534 N/A 0.206±0.00 N/A N/A N/A N/A 0.140±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000355301 0.638±0.00 0.681±0.00 0.204±0.00 0.690±0.10 1.001±0.66 0.767±0.55 0.323±0.21 0.141±0.00 N/A 1.184±0.00 3.024±0.00 0.721±0.09 0.226±0.03 2.704±0.00
ENST00000393272 N/A N/A N/A 0.194±0.00 N/A N/A 0.088±0.00 N/A N/A N/A 0.186±0.00 0.448±0.00 0.198±0.00 3.078±1.10
ENST00000417665 N/A N/A N/A 0.292±0.00 N/A 0.288±0.09 0.404±0.00 1.392±0.00 0.443±0.00 1.013±0.00 N/A 0.594±0.11 0.174±0.05 5.359±0.19
ENST00000418527 N/A N/A 0.870±0.00 N/A 0.427±0.00 N/A N/A 0.707±0.43 0.191±0.00 N/A N/A 1.450±0.00 0.318±0.04 N/A
ENST00000422492 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445609 N/A N/A N/A N/A N/A 0.296±0.00 0.293±0.00 0.543±0.00 N/A 0.518±0.13 0.648±0.00 1.298±0.50 0.167±0.03 N/A
ENST00000449600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461707 0.219±0.00 0.515±0.00 N/A 0.160±0.01 0.610±0.00 0.197±0.00 0.129±0.00 0.381±0.00 0.172±0.11 N/A 0.110±0.00 0.422±0.20 N/A 1.301±0.00
ENST00000493051 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496524 N/A N/A 0.098±0.00 0.056±0.00 0.032±0.00 0.045±0.00 0.060±0.00 0.081±0.07 0.041±0.03 0.292±0.00 0.103±0.07 0.253±0.00 0.018±0.00 0.791±0.00
ENSG00000144063 ENST00000272462 0.670±0.00 N/A 0.973±0.00 1.578±0.00 2.307±0.92 5.894±0.68 2.284±1.10 0.314±0.00 1.809±0.00 6.144±3.87 2.759±0.00 11.008±4.66 4.187±3.55 1.839±1.02
ENST00000424988 N/A N/A N/A N/A N/A N/A N/A 1.358±0.00 N/A N/A N/A N/A N/A N/A
ENST00000427178 N/A N/A N/A N/A N/A N/A N/A 1.064±0.00 N/A N/A N/A N/A N/A 1.700±0.00
ENSG00000233370 ENST00000418944 N/A N/A N/A N/A N/A N/A 0.027±0.00 N/A N/A N/A N/A 0.035±0.00 N/A 0.115±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027377 ENSMUST00000028856 8.720±3.30 1.998±0.94 2.425±0.13 0.350±0.21 6.579±2.58 84.828±25.21 4.108±0.61 0.643±0.14 0.058±0.04 10.068±3.16 1.183±0.15 4.222±1.91 0.828±0.30 0.711±0.72
ENSMUSG00000027378 ENSMUST00000028857 2.357±0.95 1.313±0.43 2.700±0.72 2.578±0.46 1.369±0.29 0.811±0.26 1.058±0.47 4.720±0.64 0.827±0.38 1.029±0.32 7.921±0.92 4.755±3.91 0.636±0.50 70.738±20.66
ENSMUST00000110357 3.981±0.66 2.770±0.36 6.937±0.01 5.252±1.09 2.449±1.02 0.714±0.35 3.042±0.40 8.131±0.54 1.419±1.01 4.726±0.47 4.496±1.06 5.379±2.03 0.785±0.29 226.186±22.39
ENSMUST00000144938 2.962±0.00 N/A N/A N/A N/A 0.497±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148033 N/A N/A N/A N/A N/A 1.280±0.00 N/A N/A N/A N/A N/A N/A N/A N/A

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