C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SMAD family member 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000379826 SMAD9-201 ENSG00000120693 9606 - 13:36844831-36920272 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalLiverLungOvaryPlacentaENST00000379826
Transcript ID Adipose Adrenal Liver Lung Ovary Placenta
ENST00000379826 1.231±0.00 0.855±0.00 1.420±0.00 0.279±0.00 0.298±0.04 0.847±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004CB CIL_0004CB_0002 CGP 13:36819224-36920765
CIL_0000PF CIL_0000PF_0002 CGP 13:36844831-37000261

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001657 IEA ureteric bud development
GO:0001666 IEA response to hypoxia
GO:0001880 IEA Mullerian duct regression
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI:IEA protein binding
GO:0005622 TAS:IEA intracellular
GO:0005634 TAS nucleus
GO:0005654 TAS nucleoplasm
GO:0005667 IEA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006468 IEA protein phosphorylation
GO:0007179 IEA transforming growth factor beta receptor signaling pathway
GO:0030509 TAS BMP signaling pathway
GO:0030618 TAS transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity
GO:0030901 IEA midbrain development
GO:0030902 IEA hindbrain development
GO:0035556 TAS intracellular signal transduction
GO:0045597 IEA positive regulation of cell differentiation
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0051216 IEA cartilage development
GO:0060348 IEA bone development
GO:0071407 IEA cellular response to organic cyclic compound

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000029371 Smad9-001 protein_coding Mus_musculus 0 756

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