C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004MC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000165480-ENSG00000173141 CGP 9606 13:21153595-21179084
GeneTranscriptPositionBiotype
ENSG00000165480 (SKA3)
spindle and kinetochore associated complex subunit 3 		ENST00000298260 (SKA3-005) 21153595-21176548 nonsense_mediated_decay
ENST00000314759 (SKA3-001) 21153595-21176602 protein_coding
ENST00000400018 (SKA3-006) 21153595-21176547 protein_coding
ENST00000462482 (SKA3-002) 21154697-21176551 nonsense_mediated_decay
ENST00000465471 (SKA3-007) 21161790-21176551 nonsense_mediated_decay
ENST00000475251 (SKA3-003) 21172269-21176473 retained_intron
ENST00000536239 (SKA3-004) 21168222-21172713 retained_intron
ENSG00000173141 (MRPL57)
mitochondrial ribosomal protein L57 		ENST00000309594 (MRPL57-001) 21176645-21179084 protein_coding
CIL_0004MC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021965-ENSMUSG00000021967 CGP 10090 14:57806561-57828745
GeneTranscriptPositionBiotype
ENSMUSG00000021965 (Ska3)
spindle and kinetochore associated complex subunit 3 		ENSMUST00000022536 (Ska3-201) 57806561-57826163 protein_coding
ENSMUSG00000021967 (Mrpl57)
mitochondrial ribosomal protein L53 		ENSMUST00000022538 (Mrpl57-201) 57826239-57828745 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004MC_0001ENSG00000165480ENST00000298260ENST00000314759ENST00000400018ENST00000462482ENST00000465471ENST00000475251ENST00000536239ENSG00000173141ENST00000309594CIL_0004MC_0002ENSMUSG00000021965ENSMUST00000022536ENSMUSG00000021967ENSMUST00000022538
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004MC_0001ENSG00000165480ENST00000298260ENST00000314759ENST00000400018ENST00000462482ENST00000465471ENST00000475251ENST00000536239ENSG00000173141ENST00000309594CIL_0004MC_0002ENSMUSG00000021965ENSMUST00000022536ENSMUSG00000021967ENSMUST00000022538
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000165480 ENST00000298260 N/A 0.127±0.00 N/A 0.036±0.00 N/A 0.090±0.00 N/A N/A 0.019±0.00 N/A N/A 2.686±1.82 0.700±0.10 3.224±0.00
ENST00000314759 N/A N/A N/A N/A 0.107±0.00 N/A N/A N/A N/A N/A N/A 1.827±0.80 1.128±0.00 1.553±0.92
ENST00000400018 N/A N/A 0.094±0.00 0.020±0.00 0.235±0.00 N/A 0.049±0.00 0.031±0.00 0.053±0.00 0.019±0.00 0.013±0.00 2.078±0.00 0.289±0.13 N/A
ENST00000462482 0.075±0.00 N/A N/A 0.126±0.00 0.257±0.00 N/A N/A 0.039±0.00 N/A N/A N/A 14.507±0.00 1.742±0.00 6.889±0.00
ENST00000465471 0.097±0.00 0.217±0.00 N/A 0.247±0.17 0.202±0.14 N/A 0.089±0.00 0.056±0.00 0.256±0.00 N/A N/A 2.150±0.00 N/A N/A
ENST00000475251 N/A N/A N/A N/A N/A N/A 0.151±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000536239 N/A N/A N/A N/A N/A 0.064±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000173141 ENST00000309594 4.343±0.00 8.321±0.00 0.747±0.00 4.963±1.67 3.153±2.04 3.537±2.47 4.621±3.60 6.602±4.25 5.009±3.82 2.837±2.03 5.717±2.56 7.254±3.32 8.145±2.56 4.972±2.25
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021965 ENSMUST00000022536 0.397±0.28 0.246±0.14 0.243±0.03 1.475±1.04 0.277±0.16 0.807±0.16 0.074±0.03 0.079±0.04 3.636±3.67 0.131±0.03 0.060±0.02 1.152±0.39 3.859±2.61 0.929±0.33
ENSMUSG00000021967 ENSMUST00000022538 10.416±2.67 39.669±5.06 8.238±2.13 6.485±5.36 14.941±8.49 23.125±3.79 5.212±1.57 12.266±2.71 14.684±5.41 10.639±3.70 2.897±1.16 24.392±12.48 4.643±3.66 17.538±9.26

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