C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spindle and kinetochore associated complex subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000022536 Ska3-201 ENSMUSG00000021965 10090 - 14:57806561-57826163 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000022536
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000022536 0.397±0.28 0.246±0.14 0.243±0.03 1.475±1.04 0.277±0.16 0.807±0.16 0.074±0.03 0.079±0.04 3.636±3.67 0.131±0.03 0.060±0.02 1.152±0.39 3.859±2.61 0.929±0.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SS CIL_0003SS_0002 CGP 14:57798180-57826163
CIL_0004MC CIL_0004MC_0002 CGP 14:57806561-57828745

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000940 ISS condensed chromosome outer kinetochore
GO:0003674 ND molecular_function
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0005876 ISS spindle microtubule
GO:0007059 ISS chromosome segregation
GO:0007067 ISS mitotic nuclear division
GO:0031110 ISS regulation of microtubule polymerization or depolymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298260 SKA3-005 nonsense_mediated_decay Homo_sapiens 0 412
ENST00000314759 SKA3-001 protein_coding Homo_sapiens 0 604
ENST00000400018 SKA3-006 protein_coding Homo_sapiens 0 586
ENST00000465471 SKA3-007 nonsense_mediated_decay Homo_sapiens 0 381

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