C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: spindle and kinetochore associated complex subunit 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000298260 SKA3-005 ENSG00000165480 9606 - 13:21153595-21176548 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonLiverOvaryPlacentaTestisENST00000298260
Transcript ID Adrenal Brain Colon Liver Ovary Placenta Testis
ENST00000298260 0.127±0.00 0.036±0.00 0.090±0.00 0.019±0.00 2.686±1.82 0.700±0.10 3.224±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SS CIL_0003SS_0001 CGP 13:21140514-21176602
CIL_0004MC CIL_0004MC_0001 CGP 13:21153595-21179084

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000940 IDA condensed chromosome outer kinetochore
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005876 IDA spindle microtubule
GO:0007059 IMP chromosome segregation
GO:0007067 IMP mitotic nuclear division
GO:0031110 IDA regulation of microtubule polymerization or depolymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000022536 Ska3-201 protein_coding Mus_musculus 0 412

Loading