C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004N5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000014626-ENSDARG00000012824 CGP 7955 12:6074362-6198935
GeneTranscriptPositionBiotype
ENSDARG00000012824 (itga3b)
integrin, alpha 3b 		ENSDART00000105884 (itga3b-001) 6123093-6198935 protein_coding
ENSDARG00000014626 (dlx3b)
distal-less homeobox gene 3b 		ENSDART00000017191 (dlx3b-001) 6074362-6077882 protein_coding
CIL_0004N5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000064195-ENSG00000005884 CGP 9606 17:49990005-50090481
GeneTranscriptPositionBiotype
ENSG00000005884 (ITGA3)
integrin, alpha 3 (antigen CD49C, alpha 3 subunit of VLA-3 receptor) 		ENST00000007722 (ITGA3-020) 50056440-50089729 protein_coding
ENST00000320031 (ITGA3-001) 50056110-50090480 protein_coding
ENST00000504417 (ITGA3-018) 50080317-50081380 nonsense_mediated_decay
ENST00000505306 (ITGA3-002) 50056068-50090480 retained_intron
ENST00000505552 (ITGA3-011) 50071740-50074211 retained_intron
ENST00000505612 (ITGA3-013) 50075460-50076733 retained_intron
ENST00000506401 (ITGA3-003) 50055968-50076995 nonsense_mediated_decay
ENST00000506437 (ITGA3-006) 50086329-50090481 retained_intron
ENST00000506827 (ITGA3-014) 50076625-50090481 protein_coding
ENST00000507771 (ITGA3-015) 50077400-50079016 retained_intron
ENST00000508100 (ITGA3-009) 50056487-50064789 retained_intron
ENST00000510809 (ITGA3-012) 50072160-50075700 nonsense_mediated_decay
ENST00000512553 (ITGA3-010) 50070873-50074514 protein_coding
ENST00000514834 (ITGA3-017) 50088213-50089815 retained_intron
ENST00000515147 (ITGA3-016) 50078004-50079483 retained_intron
ENST00000570989 (ITGA3-019) 50063538-50066032 retained_intron
ENSG00000064195 (DLX3)
distal-less homeobox 3 		ENST00000434704 (DLX3-001) 49990005-49995224 protein_coding
ENST00000512495 (DLX3-002) 49991335-49993703 protein_coding
ENSG00000246640 (RP11-1094H24.4)
 ENST00000499842 (RP11-1094H24.4-001) 50050349-50055739 lincRNA
ENSG00000248172 (RP11-1094H24.3)
 ENST00000511867 (RP11-1094H24.3-001) 49996889-50016844 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004N5_0001ENSDARG00000012824ENSDART00000105884ENSDARG00000014626ENSDART00000017191CIL_0004N5_0002ENSG00000005884ENST00000007722ENST00000320031ENST00000504417ENST00000505306ENST00000505552ENST00000505612ENST00000506401ENST00000506437ENST00000506827ENST00000507771ENST00000508100ENST00000510809ENST00000512553ENST00000514834ENST00000515147ENST00000570989ENSG00000064195ENST00000434704ENST00000512495ENSG00000246640ENST00000499842ENSG00000248172ENST00000511867
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004N5_0001ENSDARG00000012824ENSDART00000105884ENSDARG00000014626ENSDART00000017191CIL_0004N5_0002ENSG00000005884ENST00000007722ENST00000320031ENST00000505306ENST00000506437ENST00000506827ENST00000514834ENSG00000064195ENST00000434704ENST00000512495ENSG00000246640ENST00000499842ENSG00000248172ENST00000511867
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000012824 ENSDART00000105884 N/A N/A N/A 0.710±0.53 N/A N/A 0.822±0.65 N/A 0.047±0.00 N/A 0.459±0.00 N/A N/A N/A
ENSDARG00000014626 ENSDART00000017191 N/A N/A N/A 0.111±0.07 N/A N/A 0.744±0.56 0.538±0.28 N/A N/A 0.389±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000005884 ENST00000007722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.487±0.00 2.591±0.00 N/A N/A
ENST00000320031 9.513±0.00 10.566±0.00 N/A 3.534±0.00 4.929±2.34 3.245±1.22 3.658±0.00 29.646±0.00 0.268±0.00 22.775±18.96 4.462±0.00 14.427±7.38 35.017±4.69 6.081±0.00
ENST00000504417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505306 N/A N/A N/A N/A N/A 1.209±0.00 N/A N/A N/A N/A N/A 1.799±0.00 N/A N/A
ENST00000505552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505612 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506401 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506437 N/A N/A N/A 1.261±0.00 0.693±0.00 N/A N/A 0.028±0.00 0.775±0.69 N/A 0.092±0.00 1.811±0.00 N/A 0.539±0.00
ENST00000506827 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.306±0.00 N/A N/A N/A
ENST00000507771 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508100 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510809 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514834 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.431±0.00 N/A N/A N/A
ENST00000515147 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570989 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000064195 ENST00000434704 0.220±0.00 0.042±0.00 0.083±0.00 0.040±0.00 0.060±0.03 0.123±0.00 0.033±0.00 N/A 0.044±0.00 0.048±0.00 0.045±0.00 1.552±1.82 12.122±2.16 0.200±0.00
ENST00000512495 N/A N/A N/A N/A 0.399±0.00 N/A N/A 0.312±0.00 N/A 0.380±0.00 N/A N/A N/A 0.442±0.00
ENSG00000246640 ENST00000499842 N/A 0.033±0.00 N/A 0.088±0.06 0.034±0.00 0.123±0.00 0.025±0.00 0.027±0.00 N/A 0.294±0.02 0.034±0.00 0.077±0.05 0.203±0.08 0.061±0.02
ENSG00000248172 ENST00000511867 N/A N/A N/A N/A N/A N/A N/A 0.031±0.00 N/A 0.141±0.00 N/A N/A N/A N/A

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