C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ST3 beta-galactoside alpha-2,3-sialyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000521180 ST3GAL1-001 ENSG00000008513 9606 - 8:133454853-133571925 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyMuscleOvaryPlacentaTestisENST00000521180
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000521180 1.271±0.00 2.222±0.00 0.657±0.00 0.869±0.01 1.894±0.00 10.168±0.00 1.369±0.00 0.851±0.00 2.959±2.62 3.837±0.30 0.210±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094T CIL_00094T_0001 VISTA 8:133226403-133828417
CIL_0004PW CIL_0004PW_0001 CGP 8:133237171-133571940
CIL_0008CD CIL_0008CD_0001 VISTA 8:133368805-133970973
CIL_0004PT CIL_0004PT_0001 CGP 8:133454848-134713049

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0003836 ISS beta-galactoside (CMP) alpha-2,3-sialyltransferase activity
GO:0005794 IEA Golgi apparatus
GO:0005975 TAS carbohydrate metabolic process
GO:0006054 ISS N-acetylneuraminate metabolic process
GO:0006464 TAS cellular protein modification process
GO:0006468 IEA protein phosphorylation
GO:0006486 IEA protein glycosylation
GO:0006487 ISS protein N-linked glycosylation
GO:0008373 IEA sialyltransferase activity
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016266 TAS O-glycan processing
GO:0018146 TAS keratan sulfate biosynthetic process
GO:0030173 IEA integral component of Golgi membrane
GO:0030203 TAS glycosaminoglycan metabolic process
GO:0042339 TAS keratan sulfate metabolic process
GO:0043687 TAS post-translational protein modification
GO:0044267 TAS cellular protein metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0070062 IDA extracellular vesicular exosome
GO:0097503 IEA:ISS sialylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092640 St3gal1-201 protein_coding Mus_musculus 0 907
ENSMUST00000034197 St3gal2-001 protein_coding Mus_musculus 3e-21 110

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