C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ST3 beta-galactoside alpha-2,3-sialyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000092640 St3gal1-201 ENSMUSG00000013846 10090 - 15:67102875-67113992 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000092640
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000092640 5.394±0.00 1.782±0.61 20.604±0.00 3.720±1.70 4.025±0.00 4.345±0.00 4.074±3.59 18.977±3.79 6.197±3.92 5.332±4.10 0.486±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009D4 CIL_0009D4_0002 VISTA 15:66524301-67127162
CIL_00094T CIL_00094T_0002 VISTA 15:66842033-67443636
CIL_0004PW CIL_0004PW_0002 CGP 15:66929321-67113992
CIL_0008CD CIL_0008CD_0002 VISTA 15:66945066-67547938
CIL_0004PT CIL_0004PT_0002 CGP 15:67102875-68258856

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003836 IMP beta-galactoside (CMP) alpha-2,3-sialyltransferase activity
GO:0006054 ISS N-acetylneuraminate metabolic process
GO:0006468 IDA protein phosphorylation
GO:0006486 IMP protein glycosylation
GO:0006487 ISS protein N-linked glycosylation
GO:0016020 IEA membrane
GO:0030173 IEA integral component of Golgi membrane
GO:0070062 IEA extracellular vesicular exosome
GO:0097503 ISS sialylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000399640 ST3GAL1-201 protein_coding Homo_sapiens 0 907
ENST00000513810 ST3GAL1P1-001 processed_pseudogene Homo_sapiens 0 588
ENST00000521180 ST3GAL1-001 protein_coding Homo_sapiens 0 907
ENST00000522652 ST3GAL1-003 protein_coding Homo_sapiens 0 907

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