C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: structural maintenance of chromosomes 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000023068 Smc1b-201 ENSMUSG00000022432 10090 - 15:85064691-85131957 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000023068
Transcript ID Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000023068 0.113±0.03 0.018±0.01 0.016±0.00 0.014±0.01 0.014±0.00 0.021±0.01 0.055±0.00 0.008±0.00 0.159±0.06 0.097±0.07 49.345±65.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00054D CIL_00054D_0002 CGP 15:85037062-85131957
CIL_00054C CIL_00054C_0002 CGP 15:85064691-85144569

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000775 IDA chromosome, centromeric region
GO:0000794 IDA condensed nuclear chromosome
GO:0000795 IDA synaptonemal complex
GO:0000800 IDA lateral element
GO:0003677 IDA DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005654 TAS nucleoplasm
GO:0007062 IDA sister chromatid cohesion
GO:0007126 IPI meiotic nuclear division
GO:0030893 ISS meiotic cohesin complex
GO:0034991 IDA nuclear meiotic cohesin complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357450 SMC1B-003 protein_coding Homo_sapiens 0 3949
ENST00000404354 SMC1B-002 protein_coding Homo_sapiens 0 3476

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