C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00055E_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000175048-ENSG00000130340 CGP 9606 6:157381133-157945077
GeneTranscriptPositionBiotype
ENSG00000130340 (SNX9)
sorting nexin 9 		ENST00000392185 (SNX9-001) 157823264-157945077 protein_coding
ENST00000611124 (SNX9-201) 157867249-157945077 protein_coding
ENST00000614703 (SNX9-002) 157700387-157875149 protein_coding
ENST00000614800 (SNX9-003) 157716046-157875087 protein_coding
ENSG00000219448 (RP11-193H22.2)
 ENST00000401486 (RP11-193H22.2-001) 157577087-157582277 processed_pseudogene
ENSG00000220867 (HSPE1P26)
heat shock 10kDa protein 1 pseudogene 26 		ENST00000405341 (HSPE1P26-001) 157924402-157924676 processed_pseudogene
ENSG00000234361 (RP11-52J3.3)
 ENST00000411838 (RP11-52J3.3-001) 157829143-157830573 antisense
ENSG00000236324 (RP3-403L10.3)
 ENST00000446768 (RP3-403L10.3-001) 157885114-157892786 antisense
ENSG00000252658 (RNU6-786P)
RNA, U6 small nuclear 786, pseudogene 		ENST00000516849 (RNU6-786P-201) 157934168-157934257 snRNA
CIL_00055E_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034265-ENSMUSG00000002365 CGP 10090 17:5492600-5931033
GeneTranscriptPositionBiotype
ENSMUSG00000002365 (Snx9)
sorting nexin 9 		ENSMUST00000002436 (Snx9-201) 5841328-5931033 protein_coding
ENSMUSG00000034265 (Zdhhc14)
zinc finger, DHHC domain containing 14 		ENSMUST00000089185 (Zdhhc14-201) 5492600-5753891 protein_coding
ENSMUSG00000068120 (Gm10231)
predicted pseudogene 10231 		ENSMUST00000181584 (Gm10231-001) 5816200-5816640 processed_pseudogene
ENSMUSG00000096962 (Gm26622)
predicted gene, 26622 		ENSMUST00000180520 (Gm26622-001) 5837968-5838265 processed_pseudogene
ENSMUSG00000096965 (3300005D01Rik)
RIKEN cDNA 3300005D01 gene 		ENSMUST00000180902 (3300005D01Rik-004) 5798699-5803048 lincRNA
ENSMUST00000180924 (3300005D01Rik-003) 5798657-5802893 lincRNA
ENSMUST00000181392 (3300005D01Rik-002) 5799652-5802894 lincRNA
ENSMUST00000181484 (3300005D01Rik-001) 5799491-5803240 lincRNA
ENSMUSG00000097186 (Gm26595)
predicted gene, 26595 		ENSMUST00000181585 (Gm26595-001) 5817472-5817955 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00055E_0001ENSG00000130340ENST00000392185ENST00000611124ENST00000614703ENST00000614800ENSG00000219448ENST00000401486ENSG00000220867ENST00000405341ENSG00000234361ENST00000411838ENSG00000236324ENST00000446768ENSG00000252658ENST00000516849CIL_00055E_0002ENSMUSG00000002365ENSMUST00000002436ENSMUSG00000034265ENSMUST00000089185ENSMUSG00000068120ENSMUST00000181584ENSMUSG00000096962ENSMUST00000180520ENSMUSG00000096965ENSMUST00000180902ENSMUST00000180924ENSMUST00000181392ENSMUST00000181484ENSMUSG00000097186ENSMUST00000181585
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00055E_0001ENSG00000130340ENST00000392185ENST00000611124ENSG00000219448ENST00000401486ENSG00000220867ENST00000405341ENSG00000234361ENST00000411838ENSG00000236324ENST00000446768ENSG00000252658ENST00000516849CIL_00055E_0002ENSMUSG00000002365ENSMUST00000002436ENSMUSG00000034265ENSMUST00000089185ENSMUSG00000068120ENSMUST00000181584ENSMUSG00000096962ENSMUST00000180520ENSMUSG00000096965ENSMUST00000180902ENSMUST00000180924ENSMUST00000181392ENSMUST00000181484ENSMUSG00000097186ENSMUST00000181585
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000130340 ENST00000392185 N/A N/A 1.831±0.00 1.089±0.00 1.632±0.00 N/A 1.382±0.28 N/A 2.527±0.00 2.390±0.63 N/A 15.568±20.27 11.885±12.52 8.981±0.00
ENST00000611124 N/A N/A 0.614±0.00 1.939±0.00 2.106±0.00 N/A N/A 2.806±0.00 6.282±0.00 N/A 1.613±0.00 9.880±0.00 N/A N/A
ENST00000614703 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000614800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000219448 ENST00000401486 0.166±0.00 0.406±0.00 N/A 0.243±0.00 0.169±0.00 0.019±0.00 N/A 0.152±0.06 0.103±0.00 N/A N/A 0.015±0.00 0.010±0.00 N/A
ENSG00000220867 ENST00000405341 0.089±0.00 0.180±0.00 0.466±0.00 0.979±0.66 0.128±0.00 0.592±0.35 N/A 0.518±0.00 3.968±0.00 0.198±0.00 N/A 0.751±0.88 0.119±0.00 0.111±0.00
ENSG00000234361 ENST00000411838 N/A 0.116±0.00 N/A 0.056±0.00 0.240±0.00 N/A 0.080±0.04 N/A 0.301±0.00 N/A N/A 0.075±0.05 N/A 1.612±0.10
ENSG00000236324 ENST00000446768 N/A N/A N/A 0.083±0.00 N/A 0.299±0.00 0.096±0.00 N/A N/A N/A N/A 1.037±0.95 N/A N/A
ENSG00000252658 ENST00000516849 N/A N/A N/A N/A 0.634±0.00 N/A N/A N/A 0.575±0.00 N/A N/A 21.097±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002365 ENSMUST00000002436 11.488±6.70 8.988±2.09 N/A 3.120±0.00 12.169±0.00 12.087±2.56 N/A 8.660±0.00 1.558±0.00 N/A 3.012±0.55 14.407±9.76 51.715±29.97 4.821±0.00
ENSMUSG00000034265 ENSMUST00000089185 1.034±0.23 0.373±0.06 2.878±2.04 3.156±1.77 0.887±0.66 1.397±0.49 0.474±0.03 0.425±0.13 1.518±1.84 0.914±0.32 0.562±0.19 1.025±0.47 3.254±3.21 0.706±0.33
ENSMUSG00000068120 ENSMUST00000181584 N/A N/A 9.499±0.00 5.409±0.00 N/A N/A N/A N/A 10.648±0.36 N/A N/A N/A N/A N/A
ENSMUSG00000096962 ENSMUST00000180520 0.502±0.27 0.628±0.00 N/A 0.230±0.02 1.249±0.21 0.713±0.00 0.267±0.00 0.725±0.61 0.311±0.13 0.679±0.31 0.275±0.09 1.980±0.95 0.333±0.09 0.627±0.32
ENSMUSG00000096965 ENSMUST00000180902 0.271±0.09 0.248±0.07 0.108±0.00 0.021±0.00 0.545±0.00 0.148±0.00 0.044±0.00 0.168±0.00 0.544±0.48 0.356±0.05 N/A 0.243±0.10 0.594±0.09 N/A
ENSMUST00000180924 N/A N/A 0.091±0.00 N/A 0.461±0.08 0.247±0.00 N/A N/A 1.744±0.46 0.407±0.09 0.110±0.03 0.528±0.23 0.487±0.06 N/A
ENSMUST00000181392 0.319±0.07 N/A N/A N/A 1.239±0.73 0.247±0.00 0.050±0.02 0.252±0.01 N/A 0.395±0.10 N/A 0.238±0.08 1.078±0.00 N/A
ENSMUST00000181484 0.328±0.12 N/A 0.104±0.01 N/A 0.552±0.23 0.156±0.00 0.075±0.02 0.343±0.15 0.212±0.12 0.235±0.06 0.049±0.00 0.138±0.04 0.410±0.23 0.016±0.00
ENSMUSG00000097186 ENSMUST00000181585 N/A 0.151±0.00 0.036±0.01 0.023±0.00 N/A N/A 0.095±0.00 0.091±0.00 0.066±0.06 0.135±0.00 0.136±0.00 0.377±0.00 0.318±0.25 0.095±0.01

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