C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000002436 Snx9-201 ENSMUSG00000002365 10090 + 17:5841328-5931033 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000002436
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000002436 11.488±6.70 8.988±2.09 3.120±0.00 12.169±0.00 12.087±2.56 8.660±0.00 1.558±0.00 3.012±0.55 14.407±9.76 51.715±29.97 4.821±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055E CIL_00055E_0002 CGP 17:5492600-5931033
CIL_00055D CIL_00055D_0002 CGP 17:5841328-6044290

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000281 ISS mitotic cytokinesis
GO:0005515 IPI protein binding
GO:0005545 ISS 1-phosphatidylinositol binding
GO:0005737 IDA cytoplasm
GO:0005768 IBA endosome
GO:0005802 ISS trans-Golgi network
GO:0005886 IDA plasma membrane
GO:0006886 IMP intracellular protein transport
GO:0006897 ISS endocytosis
GO:0006898 ISS receptor-mediated endocytosis
GO:0007067 IEA mitotic nuclear division
GO:0016023 ISS cytoplasmic membrane-bounded vesicle
GO:0016197 ISS endosomal transport
GO:0030136 ISS clathrin-coated vesicle
GO:0030659 ISS cytoplasmic vesicle membrane
GO:0031234 ISS extrinsic component of cytoplasmic side of plasma membrane
GO:0031625 IEA ubiquitin protein ligase binding
GO:0032461 ISS positive regulation of protein oligomerization
GO:0035091 IDA phosphatidylinositol binding
GO:0036089 ISS cleavage furrow formation
GO:0042803 IEA protein homodimerization activity
GO:0042995 IEA cell projection
GO:0043547 ISS positive regulation of GTPase activity
GO:0051044 IEA positive regulation of membrane protein ectodomain proteolysis
GO:0060988 ISS lipid tube assembly
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000392185 SNX9-001 protein_coding Homo_sapiens 0 2148
ENST00000611124 SNX9-201 protein_coding Homo_sapiens 0 2080

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