C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TBC1 domain family, member 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000036113 Tbc1d16-001 ENSMUSG00000039976 10090 - 11:119143045-119228499 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000036113
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000036113 5.802±1.85 3.660±1.05 7.501±0.96 22.603±13.12 5.051±1.30 5.031±1.35 11.719±1.67 9.508±3.17 2.421±1.40 7.181±0.35 7.024±1.38 8.742±1.98 4.032±2.24 0.434±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AW CIL_0005AW_0002 CGP 11:119077573-119228499
CIL_000040 CIL_000040_0002 CGP 11:119143045-119265236

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005097 IEA Rab GTPase activator activity
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0032851 IEA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307877 SRP68-001 protein_coding Homo_sapiens 0.0005 53
ENST00000310924 TBC1D16-001 protein_coding Homo_sapiens 0 2409
ENST00000340848 TBC1D16-003 protein_coding Homo_sapiens 0 1393
ENST00000539137 SRP68-002 protein_coding Homo_sapiens 0.0005 53
ENST00000570373 TBC1D16-008 protein_coding Homo_sapiens 0 966
ENST00000572862 TBC1D16-004 protein_coding Homo_sapiens 0 966
ENST00000573782 TBC1D16-006 protein_coding Homo_sapiens 0 512
ENST00000574241 TBC1D16-009 protein_coding Homo_sapiens 0 514
ENST00000574427 TBC1D16-007 protein_coding Homo_sapiens 0 680
ENST00000576768 TBC1D16-002 protein_coding Homo_sapiens 0 1173
ENST00000591272 SRP68-008 nonsense_mediated_decay Homo_sapiens 0.0005 53
ENST00000592704 SRP68-009 nonsense_mediated_decay Homo_sapiens 0.0005 53

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