C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: GDNF family receptor alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000274721 GFRA3-001 ENSG00000146013 9606 - 5:138252379-138274671 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalColonHeartLiverLungOvaryTestisENST00000274721
Transcript ID Adipose Adrenal Colon Heart Liver Lung Ovary Testis
ENST00000274721 0.505±0.00 0.228±0.00 2.551±0.00 0.350±0.17 0.079±0.00 0.337±0.10 1.118±0.51 5.005±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005D9 CIL_0005D9_0001 CGP 5:138187648-138274671
CIL_0005D8 CIL_0005D8_0001 CGP 5:138252379-138338355

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001764 IEA neuron migration
GO:0005102 TAS receptor binding
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0007165 TAS signal transduction
GO:0007399 TAS nervous system development
GO:0007411 IEA axon guidance
GO:0007422 TAS peripheral nervous system development
GO:0008046 IEA axon guidance receptor activity
GO:0009897 IEA external side of plasma membrane
GO:0019898 TAS extrinsic component of membrane
GO:0031225 IEA anchored component of membrane
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0048485 IEA sympathetic nervous system development
GO:0048666 IEA neuron development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000025224 Gfra3-201 protein_coding Mus_musculus 0 1138

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