C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005IE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000143344-ENSG00000143344 CGP 9606 1:183636085-183928531
GeneTranscriptPositionBiotype
ENSG00000143344 (RGL1)
ral guanine nucleotide dissociation stimulator-like 1 		ENST00000304685 (RGL1-001) 183636085-183928531 protein_coding
ENST00000360851 (RGL1-002) 183805120-183928531 protein_coding
ENSG00000173627 (APOBEC4)
apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative) 		ENST00000308641 (APOBEC4-001) 183646404-183653313 protein_coding
ENST00000481562 (APOBEC4-002) 183647567-183653316 processed_transcript
ENSG00000227554 (RP11-444D13.1)
 ENST00000451829 (RP11-444D13.1-001) 183754418-183754937 antisense
ENSG00000270994 (RP11-293B7.1)
 ENST00000604110 (RP11-293B7.1-001) 183709305-183710240 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0005IE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026482-ENSMUSG00000026482 CGP 10090 1:152516760-152766351
GeneTranscriptPositionBiotype
ENSMUSG00000026482 (Rgl1)
ral guanine nucleotide dissociation stimulator,-like 1 		ENSMUST00000027760 (Rgl1-001) 152516951-152625217 protein_coding
ENSMUST00000111857 (Rgl1-003) 152518750-152766351 protein_coding
ENSMUST00000111859 (Rgl1-002) 152516760-152766305 protein_coding
ENSMUST00000128251 (Rgl1-006) 152557543-152592759 processed_transcript
ENSMUST00000149536 (Rgl1-005) 152557543-152625029 nonsense_mediated_decay
ENSMUST00000188395 (Rgl1-004) 152551508-152553044 retained_intron
ENSMUSG00000055547 (Apobec4)
apolipoprotein B mRNA editing enzyme, catalytic polypeptide-like 4 (putative) 		ENSMUST00000068875 (Apobec4-001) 152750551-152757544 protein_coding
ENSMUSG00000080950 (Gm7278)
predicted gene 7278 		ENSMUST00000119836 (Gm7278-001) 152729159-152730559 processed_pseudogene
ENSMUSG00000086145 (Gm15479)
predicted gene 15479 		ENSMUST00000139309 (Gm15479-001) 152684026-152687501 sense_intronic
ENSMUSG00000099868 (RP23-434L2.1)
predicted gene 28792 		ENSMUST00000191482 (RP23-434L2.1-001) 152731206-152751824 sense_intronic

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005IE_0001ENSG00000143344ENST00000304685ENST00000360851ENSG00000173627ENST00000308641ENST00000481562ENSG00000227554ENST00000451829ENSG00000270994ENST00000604110CIL_0005IE_0002ENSMUSG00000026482ENSMUST00000027760ENSMUST00000111857ENSMUST00000111859ENSMUST00000128251ENSMUST00000149536ENSMUST00000188395ENSMUSG00000055547ENSMUST00000068875ENSMUSG00000080950ENSMUST00000119836ENSMUSG00000086145ENSMUST00000139309ENSMUSG00000099868ENSMUST00000191482
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005IE_0001ENSG00000143344ENST00000304685ENST00000360851ENSG00000173627ENST00000308641ENST00000481562ENSG00000227554ENST00000451829ENSG00000270994ENST00000604110CIL_0005IE_0002ENSMUSG00000026482ENSMUST00000027760ENSMUST00000111857ENSMUST00000111859ENSMUSG00000055547ENSMUST00000068875ENSMUSG00000080950ENSMUST00000119836ENSMUSG00000086145ENSMUST00000139309ENSMUSG00000099868ENSMUST00000191482
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000143344 ENST00000304685 N/A N/A N/A 5.837±1.73 N/A 0.791±0.00 1.395±0.57 N/A N/A N/A N/A 0.288±0.00 N/A 1.771±0.14
ENST00000360851 9.053±0.00 12.254±0.00 3.557±0.00 16.185±0.00 5.749±2.57 4.138±1.23 2.150±1.67 5.158±2.82 4.649±1.95 17.808±0.00 0.860±0.28 5.559±3.52 7.549±1.21 7.546±1.61
ENSG00000173627 ENST00000308641 0.004±0.00 N/A N/A 0.166±0.15 0.050±0.00 0.122±0.00 0.066±0.05 0.126±0.00 N/A 0.686±0.03 N/A 0.280±0.34 N/A 3.309±1.36
ENST00000481562 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.133±0.00 N/A 7.912±0.00
ENSG00000227554 ENST00000451829 N/A N/A N/A 0.122±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.270±0.00
ENSG00000270994 ENST00000604110 N/A 0.068±0.00 N/A 0.109±0.00 N/A N/A 0.031±0.00 N/A 0.237±0.00 0.168±0.00 N/A 0.061±0.02 N/A 0.035±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026482 ENSMUST00000027760 18.149±6.79 3.054±0.89 9.677±4.85 2.855±2.35 14.099±2.32 3.131±0.58 6.290±1.12 33.635±2.84 3.522±1.83 19.399±0.53 1.212±0.36 6.278±3.40 13.237±3.98 5.758±1.98
ENSMUST00000111857 2.188±0.00 0.596±0.00 N/A 10.242±12.45 N/A N/A 1.419±0.00 5.613±0.00 0.936±0.00 N/A 0.411±0.00 3.060±3.01 8.861±5.84 15.417±1.82
ENSMUST00000111859 N/A 0.367±0.00 N/A 1.826±1.68 N/A N/A N/A N/A N/A N/A N/A 1.310±0.17 N/A 2.016±0.31
ENSMUST00000128251 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000055547 ENSMUST00000068875 N/A N/A N/A 0.048±0.01 N/A 0.079±0.02 0.038±0.00 N/A 0.031±0.04 0.230±0.08 N/A 0.144±0.07 0.029±0.01 27.155±9.07
ENSMUSG00000080950 ENSMUST00000119836 1.466±0.14 2.427±0.35 0.039±0.01 0.273±0.02 0.455±0.26 1.816±1.64 0.476±0.40 0.266±0.13 0.332±0.44 0.081±0.01 0.051±0.03 2.018±1.33 2.312±2.98 1.820±1.39
ENSMUSG00000086145 ENSMUST00000139309 0.042±0.00 N/A 0.042±0.02 0.011±0.00 0.097±0.00 N/A 0.051±0.02 0.043±0.00 0.028±0.03 0.094±0.02 0.045±0.02 N/A 0.010±0.00 2.178±1.56
ENSMUSG00000099868 ENSMUST00000191482 0.232±0.00 N/A 0.062±0.00 0.298±0.00 N/A N/A N/A 0.238±0.00 N/A N/A N/A 0.613±0.00 0.029±0.01 0.116±0.00

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