C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005K5_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000008678-ENSDARG00000017107 CGP 7955 20:32444892-32485287
GeneTranscriptPositionBiotype
ENSDARG00000008678 (snx3)
sorting nexin 3 		ENSDART00000018640 (snx3-001) 32444892-32471752 protein_coding
ENSDART00000134312 (snx3-002) 32447768-32471348 processed_transcript
ENSDART00000137910 (snx3-003) 32444966-32469261 protein_coding
ENSDARG00000017107 (nr2e1)
nuclear receptor subfamily 2, group E, member 1 		ENSDART00000026635 (nr2e1-001) 32476277-32485287 protein_coding
ENSDARG00000080869 (5S_rRNA)
5S ribosomal RNA 		ENSDART00000116768 (5S_rRNA.76-201) 32473509-32473626 rRNA

Danio rerio Ensembl (Zv9)

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CIL_0005K5_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000019804-ENSMUSG00000019803 CGP 10090 10:42502030-42583632
GeneTranscriptPositionBiotype
ENSMUSG00000019803 (Nr2e1)
nuclear receptor subfamily 2, group E, member 1 		ENSMUST00000019938 (Nr2e1-001) 42561963-42583632 protein_coding
ENSMUST00000105498 (Nr2e1-002) 42563272-42568828 protein_coding
ENSMUST00000126848 (Nr2e1-003) 42571484-42580345 protein_coding
ENSMUST00000143891 (Nr2e1-004) 42572858-42580774 protein_coding
ENSMUSG00000019804 (Snx3)
sorting nexin 3 		ENSMUST00000019939 (Snx3-001) 42502031-42535370 protein_coding
ENSMUST00000105499 (Snx3-003) 42502290-42535381 protein_coding
ENSMUST00000105500 (Snx3-002) 42502030-42534787 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005K5_0001ENSDARG00000008678ENSDART00000018640ENSDART00000134312ENSDART00000137910ENSDARG00000017107ENSDART00000026635ENSDARG00000080869ENSDART00000116768CIL_0005K5_0002ENSMUSG00000019803ENSMUST00000019938ENSMUST00000105498ENSMUST00000126848ENSMUST00000143891ENSMUSG00000019804ENSMUST00000019939ENSMUST00000105499ENSMUST00000105500
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005K5_0001ENSDARG00000008678ENSDART00000018640ENSDARG00000017107ENSDART00000026635ENSDARG00000080869ENSDART00000116768CIL_0005K5_0002ENSMUSG00000019803ENSMUST00000019938ENSMUST00000105498ENSMUST00000126848ENSMUST00000143891ENSMUSG00000019804ENSMUST00000019939ENSMUST00000105499ENSMUST00000105500
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000008678 ENSDART00000018640 N/A N/A N/A 24.384±0.84 N/A N/A 26.076±3.75 40.019±5.88 6.048±0.00 N/A 19.031±0.00 N/A N/A N/A
ENSDART00000134312 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000137910 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000017107 ENSDART00000026635 N/A N/A N/A 1.769±0.40 N/A N/A 0.057±0.00 0.021±0.00 0.035±0.00 N/A 0.054±0.00 N/A N/A N/A
ENSDARG00000080869 ENSDART00000116768 N/A N/A N/A 7.357±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019803 ENSMUST00000019938 N/A 0.020±0.01 N/A 8.470±7.47 0.014±0.00 0.018±0.00 N/A N/A 0.009±0.00 N/A N/A 0.167±0.10 0.002±0.00 0.045±0.02
ENSMUST00000105498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.326±0.11 N/A 0.173±0.09
ENSMUST00000126848 N/A N/A N/A N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A
ENSMUST00000143891 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.263±0.18
ENSMUSG00000019804 ENSMUST00000019939 59.283±10.28 75.874±16.70 76.211±21.50 46.606±8.24 53.838±14.14 63.885±8.46 30.297±2.02 61.353±10.25 54.171±36.69 70.179±15.35 48.203±3.87 64.053±14.72 102.242±47.27 110.235±42.11
ENSMUST00000105499 74.557±8.71 43.837±16.41 35.267±12.66 55.060±13.98 112.379±62.81 47.199±16.46 82.786±2.27 119.001±16.83 64.214±20.88 93.060±35.55 8.896±2.24 64.373±16.22 74.647±25.66 43.771±11.01
ENSMUST00000105500 N/A N/A N/A 13.998±0.00 N/A N/A N/A N/A N/A N/A N/A 27.593±0.00 32.836±11.54 48.283±0.00

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