C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 3
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000019804 Snx3 10090 + 10:42502030-42535381 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000019939 Snx3-001 42502031-42535370 protein_coding
  ENSMUST00000105499 Snx3-003 42502290-42535381 protein_coding
  ENSMUST00000105500 Snx3-002 42502030-42534787 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019939ENSMUST00000105499ENSMUST00000105500
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019939 59.283±10.28 75.874±16.70 76.211±21.50 46.606±8.24 53.838±14.14 63.885±8.46 30.297±2.02 61.353±10.25 54.171±36.69 70.179±15.35 48.203±3.87 64.053±14.72 102.242±47.27 110.235±42.11
ENSMUST00000105499 74.557±8.71 43.837±16.41 35.267±12.66 55.060±13.98 112.379±62.81 47.199±16.46 82.786±2.27 119.001±16.83 64.214±20.88 93.060±35.55 8.896±2.24 64.373±16.22 74.647±25.66 43.771±11.01
ENSMUST00000105500 N/A N/A N/A 13.998±0.00 N/A N/A N/A N/A N/A N/A N/A 27.593±0.00 32.836±11.54 48.283±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YH CIL_0008YH_0002 VISTA 10:41950904-42552282
CIL_0009BP CIL_0009BP_0002 VISTA 10:42334080-42935172
CIL_0008G4 CIL_0008G4_0002 VISTA 10:42335863-42936982
CIL_0007KA CIL_0007KA_0003 UCNEbase 10:42339928-43024116
CIL_0005K5 CIL_0005K5_0002 CGP 10:42502030-42583632

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0005768 IBA endosome
GO:0005769 IEA early endosome
GO:0005829 IEA cytosol
GO:0006783 ISO heme biosynthetic process
GO:0010008 IEA endosome membrane
GO:0010324 IEA membrane invagination
GO:0019903 IEA protein phosphatase binding
GO:0031901 IEA early endosome membrane
GO:0032266 IEA phosphatidylinositol-3-phosphate binding
GO:0032268 IMP regulation of cellular protein metabolic process
GO:0033157 IMP regulation of intracellular protein transport
GO:0033572 IMP transferrin transport
GO:0035091 IBA phosphatidylinositol binding
GO:0042177 IEA negative regulation of protein catabolic process
GO:0042541 IMP hemoglobin biosynthetic process
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0046597 IEA negative regulation of viral entry into host cell
GO:0051224 IEA negative regulation of protein transport
GO:0070062 IEA extracellular vesicular exosome
GO:0070676 IEA intralumenal vesicle formation
GO:2000642 IEA negative regulation of early endosome to late endosome transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000008678 snx3 sorting nexin 3 protein_coding Danio_rerio
ENSG00000112335 SNX3 sorting nexin 3 protein_coding Homo_sapiens

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