C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 2, group E, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000126848 Nr2e1-003 ENSMUSG00000019803 10090 - 10:42571484-42580345 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverENSMUST00000126848
Transcript ID Liver
ENSMUST00000126848 0.030±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BP CIL_0009BP_0002 VISTA 10:42334080-42935172
CIL_0008G4 CIL_0008G4_0002 VISTA 10:42335863-42936982
CIL_0007KA CIL_0007KA_0003 UCNEbase 10:42339928-43024116
CIL_0005K5 CIL_0005K5_0002 CGP 10:42502030-42583632
CIL_0005JL CIL_0005JL_0002 CGP 10:42561963-42702459

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001078 IMP RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001662 IMP behavioral fear response
GO:0002118 IMP aggressive behavior
GO:0003677 IDA DNA binding
GO:0003707 IEA steroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007420 IMP brain development
GO:0007601 IMP visual perception
GO:0008270 IEA zinc ion binding
GO:0008284 IMP positive regulation of cell proliferation
GO:0008347 IMP glial cell migration
GO:0021542 IMP dentate gyrus development
GO:0021764 IMP amygdala development
GO:0021772 IMP olfactory bulb development
GO:0021819 IMP layer formation in cerebral cortex
GO:0021872 IMP forebrain generation of neurons
GO:0021895 IMP cerebral cortex neuron differentiation
GO:0021960 IMP anterior commissure morphogenesis
GO:0021987 IMP cerebral cortex development
GO:0030198 IMP extracellular matrix organization
GO:0035019 IMP somatic stem cell maintenance
GO:0035176 IMP social behavior
GO:0043010 IMP camera-type eye development
GO:0043066 IMP negative regulation of apoptotic process
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IEA sequence-specific DNA binding
GO:0045165 IGI cell fate commitment
GO:0045665 IMP negative regulation of neuron differentiation
GO:0045766 IMP positive regulation of angiogenesis
GO:0045787 IMP positive regulation of cell cycle
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048712 IMP negative regulation of astrocyte differentiation
GO:0048814 IMP regulation of dendrite morphogenesis
GO:0051128 IMP regulation of cellular component organization
GO:0060041 IMP retina development in camera-type eye
GO:0060164 IMP regulation of timing of neuron differentiation
GO:0060291 IMP long-term synaptic potentiation
GO:0090049 IMP regulation of cell migration involved in sprouting angiogenesis
GO:2000178 IMP negative regulation of neural precursor cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000368983 NR2E1-002 protein_coding Homo_sapiens 0 688
ENST00000368986 NR2E1-001 protein_coding Homo_sapiens 0 686
ENST00000426403 NR2E1-003 protein_coding Homo_sapiens 0 481
ENST00000484978 NR2E1-004 processed_transcript Homo_sapiens 0 363

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