C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105499 Snx3-003 ENSMUSG00000019804 10090 + 10:42502290-42535381 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000105499
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000105499 74.557±8.71 43.837±16.41 35.267±12.66 55.060±13.98 112.379±62.81 47.199±16.46 82.786±2.27 119.001±16.83 64.214±20.88 93.060±35.55 8.896±2.24 64.373±16.22 74.647±25.66 43.771±11.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YH CIL_0008YH_0002 VISTA 10:41950904-42552282
CIL_0009BP CIL_0009BP_0002 VISTA 10:42334080-42935172
CIL_0008G4 CIL_0008G4_0002 VISTA 10:42335863-42936982
CIL_0007KA CIL_0007KA_0003 UCNEbase 10:42339928-43024116
CIL_0005K5 CIL_0005K5_0002 CGP 10:42502030-42583632

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005768 IBA endosome
GO:0006783 ISO heme biosynthetic process
GO:0032268 IMP regulation of cellular protein metabolic process
GO:0033157 IMP regulation of intracellular protein transport
GO:0033572 IMP transferrin transport
GO:0035091 IBA phosphatidylinositol binding
GO:0042541 IMP hemoglobin biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000230085 SNX3-001 protein_coding Homo_sapiens 0 749
ENST00000349379 SNX3-003 protein_coding Homo_sapiens 0 435
ENST00000368979 SNX3-002 nonsense_mediated_decay Homo_sapiens 0 741
ENST00000426155 SNX3-004 protein_coding Homo_sapiens 0 996

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