C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005KL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000040087-ENSDARG00000058868 CGP 7955 10:1772173-1921518
GeneTranscriptPositionBiotype
ENSDARG00000040087 (epb41l4a)
erythrocyte membrane protein band 4.1 like 4A 		ENSDART00000058627 (epb41l4a-201) 1772176-1854334 protein_coding
ENSDART00000123842 (epb41l4a-001) 1772173-1815074 protein_coding
CIL_0005KL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000129595-ENSG00000134982 CGP 9606 5:112142441-112846239
GeneTranscriptPositionBiotype
ENSG00000129595 (EPB41L4A)
erythrocyte membrane protein band 4.1 like 4A 		ENST00000261486 (EPB41L4A-001) 112162621-112419316 protein_coding
ENST00000305368 (EPB41L4A-002) 112263408-112419313 retained_intron
ENST00000507810 (EPB41L4A-007) 112142441-112228778 processed_transcript
ENST00000509342 (EPB41L4A-004) 112165001-112183387 processed_transcript
ENST00000511405 (EPB41L4A-010) 112239600-112264987 retained_intron
ENST00000511790 (EPB41L4A-011) 112234634-112249190 processed_transcript
ENST00000512395 (EPB41L4A-005) 112262553-112392784 processed_transcript
ENST00000513333 (EPB41L4A-009) 112195661-112206062 processed_transcript
ENST00000514203 (EPB41L4A-006) 112275239-112307402 retained_intron
ENST00000515047 (EPB41L4A-003) 112170009-112205502 retained_intron
ENST00000621003 (EPB41L4A-201) 112162618-112419313 protein_coding
ENSG00000134982 (APC)
adenomatous polyposis coli 		ENST00000257430 (APC-001) 112737888-112846239 protein_coding
ENST00000502371 (APC-007) 112821896-112839871 nonsense_mediated_decay
ENST00000504915 (APC-011) 112821949-112837722 protein_coding
ENST00000505084 (APC-006) 112827213-112829954 retained_intron
ENST00000505350 (APC-012) 112707521-112766383 nonsense_mediated_decay
ENST00000507379 (APC-002) 112707522-112839054 protein_coding
ENST00000508376 (APC-004) 112737895-112846056 protein_coding
ENST00000508624 (APC-003) 112737885-112842755 nonsense_mediated_decay
ENST00000509732 (APC-008) 112707498-112767322 protein_coding
ENST00000512211 (APC-005) 112738332-112839508 protein_coding
ENSG00000212370 (RNU6-482P)
RNA, U6 small nuclear 482, pseudogene 		ENST00000391068 (RNU6-482P-201) 112778363-112778469 snRNA
ENSG00000224032 (EPB41L4A-AS1)
EPB41L4A antisense RNA 1 		ENST00000413221 (EPB41L4A-AS1-001) 112160526-112164276 lincRNA
ENST00000427306 (EPB41L4A-AS1-002) 112160529-112162302 lincRNA
ENST00000442823 (EPB41L4A-AS1-003) 112160892-112162324 lincRNA
ENST00000508590 (EPB41L4A-AS1-004) 112160934-112162311 lincRNA
ENSG00000238363 (SNORA13)
small nucleolar RNA, H/ACA box 13 		ENST00000458790 (SNORA13-201) 112161485-112161617 snoRNA
ENSG00000248350 (CTC-470E21.1)
 ENST00000513509 (CTC-470E21.1-001) 112363456-112363666 processed_pseudogene
ENSG00000250045 (CBX3P3)
chromobox homolog 3 pseudogene 3 		ENST00000508108 (CBX3P3-001) 112777630-112778161 processed_pseudogene
ENSG00000250882 (CTC-459M5.1)
 ENST00000514411 (CTC-459M5.1-001) 112173570-112175548 antisense
ENSG00000251014 (RP11-159K7.1)
 ENST00000514243 (RP11-159K7.1-001) 112546973-112547505 processed_pseudogene
ENSG00000251076 (RP11-526F3.1)
 ENST00000504004 (RP11-526F3.1-001) 112228283-112257309 antisense
ENSG00000278921 (EPB41L4A-AS2)
EPB41L4A antisense RNA 2 (head to head) 		ENST00000623705 (EPB41L4A-AS2-001) 112419583-112420978 TEC
ENST00000624967 (EPB41L4A-AS2-201) 112419583-112420611 TEC
CIL_0005KL_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000024376-ENSMUSG00000005871 CGP 10090 18:33796327-34322189
GeneTranscriptPositionBiotype
ENSMUSG00000024376 (Epb4.1l4a)
erythrocyte protein band 4.1-like 4a 		ENSMUST00000025234 (Epb4.1l4a-201) 33796327-34007206 protein_coding
ENSMUSG00000073607 (Gm10548)
predicted gene 10548 		ENSMUST00000097631 (Gm10548-001) 34207775-34221772 transcribed_processed_pseudogene
ENSMUST00000165672 (Gm10548-002) 34209799-34210070 transcribed_processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005KL_0001ENSDARG00000040087ENSDART00000058627ENSDART00000123842CIL_0005KL_0002ENSG00000129595ENST00000261486ENST00000305368ENST00000507810ENST00000509342ENST00000511405ENST00000511790ENST00000512395ENST00000513333ENST00000514203ENST00000515047ENST00000621003ENSG00000134982ENST00000257430ENST00000502371ENST00000504915ENST00000505084ENST00000505350ENST00000507379ENST00000508376ENST00000508624ENST00000509732ENST00000512211ENSG00000212370ENST00000391068ENSG00000224032ENST00000413221ENST00000427306ENST00000442823ENST00000508590ENSG00000238363ENST00000458790ENSG00000248350ENST00000513509ENSG00000250045ENST00000508108ENSG00000250882ENST00000514411ENSG00000251014ENST00000514243ENSG00000251076ENST00000504004ENSG00000278921ENST00000623705ENST00000624967CIL_0005KL_0003ENSMUSG00000024376ENSMUST00000025234ENSMUSG00000073607ENSMUST00000097631ENSMUST00000165672
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005KL_0001ENSDARG00000040087ENSDART00000058627ENSDART00000123842CIL_0005KL_0002ENSG00000129595ENST00000261486ENST00000515047ENST00000621003ENSG00000134982ENST00000257430ENST00000508376ENST00000508624ENST00000512211ENSG00000212370ENST00000391068ENSG00000224032ENST00000413221ENST00000442823ENST00000508590ENSG00000238363ENST00000458790ENSG00000248350ENST00000513509ENSG00000250045ENST00000508108ENSG00000250882ENST00000514411ENSG00000251014ENST00000514243ENSG00000251076ENST00000504004ENSG00000278921ENST00000623705ENST00000624967CIL_0005KL_0003ENSMUSG00000024376ENSMUST00000025234ENSMUSG00000073607ENSMUST00000097631ENSMUST00000165672
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000040087 ENSDART00000058627 N/A N/A N/A 4.802±0.05 N/A N/A 2.758±0.44 1.433±0.00 0.085±0.00 N/A 1.712±0.00 N/A N/A N/A
ENSDART00000123842 N/A N/A N/A 2.305±0.00 N/A N/A 0.304±0.00 N/A 0.164±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000129595 ENST00000261486 3.777±0.00 N/A N/A N/A 1.574±0.06 0.860±0.29 0.698±0.20 1.237±1.02 0.190±0.00 1.279±0.12 0.424±0.00 N/A 1.091±0.18 2.021±0.10
ENST00000305368 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509342 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511405 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511790 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512395 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000514203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000515047 N/A N/A N/A N/A 2.936±0.00 3.102±0.00 N/A N/A 4.054±0.00 N/A N/A N/A 6.638±0.00 N/A
ENST00000621003 N/A N/A N/A N/A N/A 0.560±0.00 0.465±0.00 0.214±0.00 N/A 1.402±0.00 N/A N/A 0.824±0.04 N/A
ENSG00000134982 ENST00000257430 N/A 2.241±0.00 N/A 14.871±7.58 1.419±0.00 4.594±0.00 N/A 2.026±0.00 2.027±0.00 1.832±0.00 N/A 1.617±0.61 1.431±0.00 2.821±0.00
ENST00000502371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504915 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505084 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507379 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508376 3.273±0.00 2.391±0.00 1.890±0.00 9.974±0.00 N/A 2.496±0.00 3.758±0.00 N/A N/A N/A N/A N/A N/A 4.499±0.00
ENST00000508624 N/A N/A N/A N/A 1.598±0.00 N/A N/A 1.370±0.00 1.825±0.00 N/A 1.336±0.00 0.863±0.00 N/A N/A
ENST00000509732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512211 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.807±0.00 N/A 1.933±0.00 N/A N/A
ENSG00000212370 ENST00000391068 N/A N/A N/A 0.470±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.617±0.00 N/A
ENSG00000224032 ENST00000413221 7.102±0.00 8.896±0.00 3.048±0.00 6.027±0.60 3.570±2.11 1.626±0.92 2.670±0.00 3.690±2.84 1.137±0.33 3.415±0.98 1.472±0.00 5.302±3.75 4.326±1.04 5.301±0.70
ENST00000427306 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000442823 31.053±0.00 47.017±0.00 N/A 21.388±0.00 23.436±0.00 37.902±0.00 N/A N/A 2.916±0.00 30.310±0.00 5.680±0.00 65.446±18.10 12.056±1.81 34.193±0.00
ENST00000508590 N/A N/A N/A 31.112±0.00 N/A N/A N/A 7.001±0.00 16.603±12.87 29.382±0.00 7.609±0.00 28.951±16.35 N/A N/A
ENSG00000238363 ENST00000458790 0.301±0.00 N/A N/A 0.156±0.00 81.958±81.82 N/A 0.141±0.00 4.392±3.37 N/A N/A N/A N/A N/A 0.819±0.00
ENSG00000248350 ENST00000513509 N/A 0.175±0.00 6.910±0.00 N/A N/A 2.508±0.00 N/A N/A 3.446±0.00 1.583±0.00 N/A 1.622±1.39 N/A 0.118±0.00
ENSG00000250045 ENST00000508108 N/A N/A N/A N/A N/A 0.340±0.00 0.080±0.06 1.098±0.00 N/A 0.478±0.00 N/A 0.044±0.00 0.023±0.00 N/A
ENSG00000250882 ENST00000514411 0.302±0.00 0.080±0.00 1.918±0.00 N/A 0.093±0.00 0.104±0.00 0.037±0.00 0.038±0.00 N/A 0.015±0.00 N/A 0.136±0.00 0.101±0.00 N/A
ENSG00000251014 ENST00000514243 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.052±0.00 N/A N/A
ENSG00000251076 ENST00000504004 0.046±0.00 N/A 0.510±0.00 N/A 0.068±0.00 N/A N/A 0.043±0.00 0.012±0.00 0.656±0.59 0.117±0.00 0.040±0.00 N/A 0.290±0.07
ENSG00000278921 ENST00000623705 2.134±0.00 1.514±0.00 N/A 0.315±0.24 1.213±0.00 0.571±0.36 0.283±0.22 0.971±0.00 0.256±0.00 0.209±0.00 0.256±0.00 0.537±0.41 1.529±0.83 0.577±0.14
ENST00000624967 1.130±0.00 1.144±0.00 N/A 0.055±0.00 1.061±0.00 0.320±0.00 0.228±0.10 1.017±0.00 0.109±0.01 0.906±0.00 N/A N/A 1.267±0.19 0.462±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000024376 ENSMUST00000025234 1.855±0.72 1.251±0.33 2.338±0.09 5.145±3.45 0.678±0.35 1.055±0.39 0.827±0.24 2.481±0.46 0.067±0.05 2.739±0.37 0.408±0.21 2.663±1.15 7.906±5.91 0.886±0.51
ENSMUSG00000073607 ENSMUST00000097631 0.117±0.03 0.043±0.00 0.260±0.04 0.465±0.08 0.148±0.03 0.100±0.06 0.067±0.01 0.122±0.04 0.056±0.02 0.152±0.05 0.030±0.02 0.145±0.04 0.106±0.03 0.048±0.03
ENSMUST00000165672 1.014±0.00 N/A N/A N/A N/A N/A N/A N/A 0.283±0.00 N/A N/A N/A 0.657±0.00 N/A

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