C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005N2_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000112116-ENSG00000112118 CGP 9606 6:52236681-52284881
GeneTranscriptPositionBiotype
ENSG00000112116 (IL17F)
interleukin 17F 		ENST00000336123 (IL17F-001) 52236681-52244537 protein_coding
ENST00000478427 (IL17F-002) 52236681-52239167 retained_intron
ENSG00000112118 (MCM3)
minichromosome maintenance complex component 3 		ENST00000229854 (MCM3-006) 52264009-52284751 protein_coding
ENST00000419835 (MCM3-201) 52264014-52284881 protein_coding
ENST00000421471 (MCM3-004) 52264621-52273775 protein_coding
ENST00000476448 (MCM3-003) 52275982-52279452 processed_transcript
ENST00000596288 (MCM3-001) 52264009-52284837 protein_coding
ENST00000596983 (MCM3-005) 52282111-52284881 nonsense_mediated_decay
ENST00000616552 (MCM3-202) 52264014-52284881 protein_coding
ENSG00000218363 (SLC25A20P1)
solute carrier family 25 (carnitine/acylcarnitine translocase), member 20 pseudogene 1 		ENST00000408043 (SLC25A20P1-001) 52246460-52247362 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0005N2_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000041872-ENSMUSG00000041859 CGP 10090 1:20777146-20820312
GeneTranscriptPositionBiotype
ENSMUSG00000041859 (Mcm3)
minichromosome maintenance deficient 3 (S. cerevisiae) 		ENSMUST00000053266 (Mcm3-001) 20802968-20820312 protein_coding
ENSMUST00000185296 (Mcm3-002) 20802973-20820260 retained_intron
ENSMUST00000188112 (Mcm3-005) 20803006-20803721 retained_intron
ENSMUST00000190421 (Mcm3-004) 20804686-20805940 retained_intron
ENSMUST00000191061 (Mcm3-003) 20803165-20804933 retained_intron
ENSMUSG00000041872 (Il17f)
interleukin 17F 		ENSMUST00000039046 (Il17f-001) 20777146-20784270 protein_coding
ENSMUST00000189301 (Il17f-003) 20777783-20790617 protein_coding
ENSMUST00000190692 (Il17f-004) 20787479-20790585 processed_transcript
ENSMUST00000191111 (Il17f-002) 20777679-20779554 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005N2_0001ENSG00000112116ENST00000336123ENST00000478427ENSG00000112118ENST00000229854ENST00000419835ENST00000421471ENST00000476448ENST00000596288ENST00000596983ENST00000616552ENSG00000218363ENST00000408043CIL_0005N2_0002ENSMUSG00000041859ENSMUST00000053266ENSMUST00000185296ENSMUST00000188112ENSMUST00000190421ENSMUST00000191061ENSMUSG00000041872ENSMUST00000039046ENSMUST00000189301ENSMUST00000190692ENSMUST00000191111
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005N2_0001ENSG00000112116ENST00000336123ENSG00000112118ENST00000229854ENST00000419835ENST00000421471ENST00000476448ENST00000596288ENST00000616552ENSG00000218363ENST00000408043CIL_0005N2_0002ENSMUSG00000041859ENSMUST00000053266ENSMUST00000191061ENSMUSG00000041872ENSMUST00000039046ENSMUST00000189301ENSMUST00000190692ENSMUST00000191111
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000112116 ENST00000336123 N/A N/A N/A N/A N/A 0.059±0.01 N/A N/A N/A N/A N/A 0.048±0.00 N/A 0.116±0.00
ENST00000478427 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000112118 ENST00000229854 8.718±0.00 15.667±0.00 2.564±0.00 4.088±2.05 6.330±0.71 5.719±1.12 3.822±3.12 6.811±3.60 3.081±1.25 6.044±3.89 3.260±0.00 24.675±15.90 28.532±5.32 14.937±3.20
ENST00000419835 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.565±0.00 N/A N/A N/A
ENST00000421471 N/A N/A N/A N/A N/A 4.339±0.00 N/A N/A N/A N/A N/A 41.852±0.00 26.832±0.00 10.851±0.00
ENST00000476448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.064±0.00 N/A N/A N/A
ENST00000596288 3.099±0.00 N/A N/A N/A 3.863±0.00 2.047±0.50 N/A 3.954±0.00 3.963±0.00 2.908±0.00 N/A 3.133±0.00 N/A 2.971±0.00
ENST00000596983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000616552 N/A N/A N/A N/A N/A N/A 0.796±0.00 N/A N/A N/A N/A 14.791±0.00 N/A N/A
ENSG00000218363 ENST00000408043 N/A N/A N/A N/A N/A N/A N/A 0.019±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000041859 ENSMUST00000053266 4.827±2.83 3.489±0.99 2.647±0.22 4.320±2.65 4.258±0.86 4.275±1.66 1.095±0.28 1.366±0.36 22.020±26.04 4.561±0.72 0.992±0.11 11.622±5.57 26.540±25.46 3.749±0.98
ENSMUST00000185296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188112 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190421 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000191061 N/A N/A N/A N/A N/A 3.274±0.00 N/A N/A N/A N/A 0.942±0.27 N/A N/A N/A
ENSMUSG00000041872 ENSMUST00000039046 N/A N/A N/A 0.056±0.00 N/A 0.135±0.01 N/A 0.123±0.07 0.068±0.03 N/A 0.043±0.00 0.180±0.09 N/A 0.088±0.00
ENSMUST00000189301 0.589±0.54 0.094±0.00 0.320±0.00 0.667±0.00 5.596±1.32 0.233±0.12 0.084±0.00 0.216±0.01 0.158±0.11 0.168±0.08 0.114±0.06 0.726±0.23 0.177±0.07 0.154±0.06
ENSMUST00000190692 1.052±0.00 0.195±0.00 N/A 0.335±0.00 10.644±11.90 N/A 0.069±0.00 0.118±0.00 0.070±0.00 N/A N/A 0.583±0.31 N/A 0.174±0.07
ENSMUST00000191111 N/A N/A N/A 0.095±0.00 N/A N/A N/A 0.462±0.29 N/A N/A 0.058±0.00 0.531±0.00 N/A 0.134±0.07

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