C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synapsin II
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000009538 Syn2-201 ENSMUSG00000009394 10090 + 6:115134902-115282626 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000009538
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000009538 1.376±0.09 3.805±1.59 1.192±0.05 7.130±5.06 4.195±1.07 1.672±0.64 0.459±0.07 1.876±0.23 0.018±0.01 1.813±0.31 1.788±0.85 0.136±0.16 1.198±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SM CIL_0005SM_0002 CGP 6:115004381-115282626

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005524 IEA ATP binding
GO:0007269 IGI neurotransmitter secretion
GO:0008152 IEA metabolic process
GO:0030054 IEA cell junction
GO:0030672 IDA synaptic vesicle membrane
GO:0045202 IDA synapse
GO:0046983 TAS protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000424884 SYN2-007 processed_transcript Homo_sapiens 0 516
ENST00000425297 SYN2-006 nonsense_mediated_decay Homo_sapiens 0 798
ENST00000439861 SYN2-005 retained_intron Homo_sapiens 0 1753
ENST00000447752 SYN2-004 processed_transcript Homo_sapiens 0 435
ENST00000620175 SYN2-002 protein_coding Homo_sapiens 0 1712
ENST00000621198 SYN2-001 protein_coding Homo_sapiens 0 2780

Loading