C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synapsin II
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169345 Syn2-202 ENSMUSG00000009394 10090 + 6:115134902-115276559 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169345
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169345 2.344±0.08 5.408±2.59 5.987±1.00 24.907±16.61 3.974±1.09 1.926±0.93 1.429±0.22 2.367±0.28 0.030±0.02 3.819±0.38 0.237±0.00 1.986±1.28 0.077±0.05 1.275±0.49

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SM CIL_0005SM_0002 CGP 6:115004381-115282626

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003824 IEA catalytic activity
GO:0005524 IEA ATP binding
GO:0007269 IGI neurotransmitter secretion
GO:0008152 IEA metabolic process
GO:0030054 IEA cell junction
GO:0030672 IDA synaptic vesicle membrane
GO:0045202 IDA synapse
GO:0046983 TAS protein dimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000424884 SYN2-007 processed_transcript Homo_sapiens 0 516
ENST00000425297 SYN2-006 nonsense_mediated_decay Homo_sapiens 0 952
ENST00000439861 SYN2-005 retained_intron Homo_sapiens 0 708
ENST00000447752 SYN2-004 processed_transcript Homo_sapiens 0 435
ENST00000620175 SYN2-002 protein_coding Homo_sapiens 0 2303
ENST00000621198 SYN2-001 protein_coding Homo_sapiens 0 1712

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