C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, gamma 1 pseudogene 12
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423183 ACTG1P12-001 ENSG00000226642 9606 + 3:12070195-12071360 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyMuscleOvaryTestisENST00000423183
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Muscle Ovary Testis
ENST00000423183 0.115±0.00 0.054±0.00 0.193±0.00 0.197±0.06 0.053±0.00 0.016±0.00 0.019±0.00 0.015±0.00 0.061±0.00 0.131±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SM CIL_0005SM_0001 CGP 3:11790442-12191400
CIL_0004U7 CIL_0004U7_0002 CGP 3:12004402-12191400

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1048
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1022
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1013
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 1002
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 955
ENSDART00000141737 actb2-001 protein_coding Danio_rerio 0 913
ENSDART00000055194 actb2-007 protein_coding Danio_rerio 0 913
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 852
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 835
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 784
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 782
ENSMUST00000090269 Actc1-001 protein_coding Mus_musculus 0 726
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 713
ENSDART00000133319 actb1-005 protein_coding Danio_rerio 0 691
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 691
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 671
ENSMUST00000039631 Acta2-201 protein_coding Mus_musculus 0 664
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 656
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 654
ENSMUST00000184255 Gm17087-001 translated_processed_pseudogene Mus_musculus 0 647
ENSDART00000080664 protein_coding Danio_rerio 0 638
ENSMUST00000121731 Actg2-002 protein_coding Mus_musculus 0 627
ENSMUST00000075161 Actg2-001 protein_coding Mus_musculus 0 627
ENSDART00000134020 actb2-003 processed_transcript Danio_rerio 0 597
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 597
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 586
ENSDART00000148290 actb2-002 nonsense_mediated_decay Danio_rerio 0 558
ENSDART00000109883 ACTC1 (2 of 2)-002 protein_coding Danio_rerio 0 508
ENSDART00000132497 actb2-006 retained_intron Danio_rerio 0 448
ENSMUST00000141904 Actg2-005 protein_coding Mus_musculus 0 396
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 370
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 340
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 340
ENSMUST00000152029 Actg2-004 protein_coding Mus_musculus 0 311
ENSMUST00000184183 Gm17087-002 protein_coding Mus_musculus 0 294
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 255
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 235
ENSDART00000135971 actb2-005 retained_intron Danio_rerio 0 222
ENSMUST00000163829 Actb-004 protein_coding Mus_musculus 9e-39 165

Loading