C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005XL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000136813-ENSG00000173258 CGP 9606 9:111360692-111577844
GeneTranscriptPositionBiotype
ENSG00000106853 (PTGR1)
prostaglandin reductase 1 		ENST00000309195 (PTGR1-001) 111562967-111599407 protein_coding
ENST00000374308 (PTGR1-005) 111592367-111599407 retained_intron
ENST00000374313 (PTGR1-003) 111592298-111599816 retained_intron
ENST00000374324 (PTGR1-004) 111562973-111597432 nonsense_mediated_decay
ENST00000407693 (PTGR1-201) 111562967-111599855 protein_coding
ENST00000422125 (PTGR1-002) 111583552-111599695 protein_coding
ENST00000466771 (PTGR1-006) 111562577-111578900 nonsense_mediated_decay
ENST00000485319 (PTGR1-007) 111592691-111597413 retained_intron
ENST00000538962 (PTGR1-202) 111549722-111599855 protein_coding
ENSG00000173258 (ZNF483)
zinc finger protein 483 		ENST00000309235 (ZNF483-002) 111525233-111544432 protein_coding
ENST00000355824 (ZNF483-201) 111525189-111539761 protein_coding
ENST00000358151 (ZNF483-001) 111525159-111577844 protein_coding
ENST00000374374 (ZNF483-003) 111525216-111528020 protein_coding
ENSG00000223238 (RNA5SP294)
RNA, 5S ribosomal pseudogene 294 		ENST00000411306 (RNA5SP294-201) 111411644-111411742 rRNA
ENSG00000224644 (RP11-16L21.7)
 ENST00000450154 (RP11-16L21.7-001) 111574192-111575427 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0005XL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050812-ENSMUSG00000038630 CGP 10090 4:58798911-58958355
GeneTranscriptPositionBiotype
ENSMUSG00000038630 (Zkscan16)
zinc finger with KRAB and SCAN domains 16 		ENSMUST00000107554 (Zkscan16-001) 58943628-58958355 protein_coding
ENSMUSG00000050812 (AI314180)
expressed sequence AI314180 		ENSMUST00000055822 (AI314180-002) 58860796-58912749 protein_coding
ENSMUST00000102889 (AI314180-001) 58798911-58912749 protein_coding
ENSMUST00000107557 (AI314180-005) 58830554-58911927 protein_coding
ENSMUST00000131611 (AI314180-011) 58815296-58819601 processed_transcript
ENSMUST00000134848 (AI314180-010) 58869539-58911902 protein_coding
ENSMUST00000135601 (AI314180-008) 58819352-58834064 processed_transcript
ENSMUST00000142102 (AI314180-009) 58832706-58834913 processed_transcript
ENSMUST00000144512 (AI314180-003) 58844151-58912704 protein_coding
ENSMUST00000149301 (AI314180-004) 58811431-58911930 protein_coding
ENSMUST00000149513 (AI314180-006) 58810625-58811842 processed_transcript
ENSMUST00000151869 (AI314180-007) 58836072-58844881 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005XL_0001ENSG00000106853ENST00000309195ENST00000374308ENST00000374313ENST00000374324ENST00000407693ENST00000422125ENST00000466771ENST00000485319ENST00000538962ENSG00000173258ENST00000309235ENST00000355824ENST00000358151ENST00000374374ENSG00000223238ENST00000411306ENSG00000224644ENST00000450154CIL_0005XL_0002ENSMUSG00000038630ENSMUST00000107554ENSMUSG00000050812ENSMUST00000055822ENSMUST00000102889ENSMUST00000107557ENSMUST00000131611ENSMUST00000134848ENSMUST00000135601ENSMUST00000142102ENSMUST00000144512ENSMUST00000149301ENSMUST00000149513ENSMUST00000151869
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005XL_0001ENSG00000106853ENST00000309195ENST00000374313ENST00000407693ENST00000466771ENST00000538962ENSG00000173258ENST00000309235ENST00000355824ENST00000358151ENST00000374374ENSG00000223238ENST00000411306ENSG00000224644ENST00000450154CIL_0005XL_0002ENSMUSG00000038630ENSMUST00000107554ENSMUSG00000050812ENSMUST00000055822ENSMUST00000102889ENSMUST00000149301
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000106853 ENST00000309195 7.273±0.00 2.739±0.00 6.529±0.00 8.365±0.00 10.285±5.82 10.138±8.44 5.830±2.50 71.465±15.17 31.837±18.95 10.242±0.00 1.384±0.42 12.820±5.27 7.648±1.61 7.630±3.61
ENST00000374308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000374313 N/A 1.725±0.00 4.370±0.00 N/A N/A N/A 1.983±0.74 N/A N/A N/A 0.532±0.00 N/A N/A N/A
ENST00000374324 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000407693 N/A N/A 5.675±0.00 N/A N/A N/A N/A 36.064±0.00 47.217±0.00 0.976±0.00 N/A 9.964±5.38 3.869±2.37 8.446±0.00
ENST00000422125 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466771 3.108±0.00 N/A N/A N/A N/A N/A N/A 18.073±0.00 32.794±0.00 N/A N/A N/A N/A N/A
ENST00000485319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000538962 N/A N/A N/A N/A 5.349±2.39 7.252±0.00 N/A 21.827±0.00 40.768±0.00 3.866±0.00 N/A 2.155±0.00 N/A N/A
ENSG00000173258 ENST00000309235 0.314±0.00 N/A 1.867±0.00 15.604±7.50 0.548±0.23 0.389±0.03 0.880±0.49 0.273±0.01 2.202±2.18 0.658±0.39 0.012±0.00 0.786±1.03 0.019±0.00 1.771±0.00
ENST00000355824 0.514±0.00 0.611±0.00 N/A N/A N/A 1.683±0.00 N/A 0.352±0.00 0.068±0.00 N/A 0.038±0.00 N/A 0.091±0.00 1.398±0.00
ENST00000358151 0.134±0.00 0.384±0.00 0.472±0.00 N/A 0.180±0.00 0.323±0.00 0.157±0.00 0.138±0.00 0.030±0.00 0.141±0.00 0.009±0.00 0.177±0.06 0.051±0.02 0.684±0.00
ENST00000374374 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.109±0.00 0.485±0.00 0.026±0.00 N/A
ENSG00000223238 ENST00000411306 N/A N/A N/A 0.258±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224644 ENST00000450154 N/A N/A N/A 0.332±0.28 0.065±0.00 N/A N/A 0.070±0.00 N/A N/A N/A 0.120±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000038630 ENSMUST00000107554 0.094±0.05 0.312±0.05 0.039±0.01 4.669±0.00 0.037±0.02 0.033±0.00 0.030±0.01 0.054±0.02 0.053±0.01 0.038±0.00 0.022±0.01 0.252±0.22 0.059±0.06 0.270±0.05
ENSMUSG00000050812 ENSMUST00000055822 6.469±0.00 45.678±7.31 N/A N/A 14.713±9.15 21.266±4.88 N/A 4.555±0.00 3.287±0.00 11.518±2.79 N/A 28.105±13.45 N/A N/A
ENSMUST00000102889 5.344±0.31 3.316±0.22 7.391±0.83 3.385±0.51 4.766±1.61 5.696±1.15 5.068±0.40 3.648±1.30 4.597±2.34 5.281±0.82 18.960±1.37 8.391±3.53 6.060±3.02 3.578±1.31
ENSMUST00000107557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134848 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000135601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142102 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144512 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149301 2.668±0.42 N/A N/A 4.454±0.00 6.286±3.86 N/A 4.862±1.79 1.639±0.29 1.998±0.17 2.079±0.00 N/A 4.499±0.00 4.036±1.08 2.224±0.80
ENSMUST00000149513 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151869 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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