C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger with KRAB and SCAN domains 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000107554 Zkscan16-001 ENSMUSG00000038630 10090 + 4:58943628-58958355 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000107554
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000107554 0.094±0.05 0.312±0.05 0.039±0.01 4.669±0.00 0.037±0.02 0.033±0.00 0.030±0.01 0.054±0.02 0.053±0.01 0.038±0.00 0.022±0.01 0.252±0.22 0.059±0.06 0.270±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093E CIL_00093E_0002 VISTA 4:58366631-58972430
CIL_0005XL CIL_0005XL_0002 CGP 4:58798911-58958355
CIL_0005XH CIL_0005XH_0002 CGP 4:58943628-58987119

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IBA sequence-specific DNA binding transcription factor activity
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IBA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000152058 si:dkey-16b10.3-001 processed_pseudogene Danio_rerio 0.000000002 69
ENSDART00000106530 zgc:171418-201 protein_coding Danio_rerio 0.000000002 69
ENSDART00000106571 AL935044.2-201 protein_coding Danio_rerio 0.000000002 69
ENSDART00000139554 BX324003.3-201 protein_coding Danio_rerio 0.000000002 69
ENSDART00000138824 si:dkey-16p19.10-201 protein_coding Danio_rerio 0.00000008 64
ENSDART00000056850 zgc:163077-201 protein_coding Danio_rerio 0.00000008 64
ENSDART00000147123 zgc:163077-001 protein_coding Danio_rerio 0.00000008 64
ENSDART00000065920 AL627305.1-201 protein_coding Danio_rerio 0.0000003 62
ENSDART00000134076 si:dkey-20i20.15-201 protein_coding Danio_rerio 0.000001 60
ENSDART00000133924 si:dkey-15h8.9-201 protein_coding Danio_rerio 0.000001 60
ENSDART00000133271 si:dkey-15h8.9-001 protein_coding Danio_rerio 0.000001 60
ENSDART00000156963 ZNF697-001 protein_coding Danio_rerio 0.000001 60
ENSDART00000139845 CR361547.1-201 protein_coding Danio_rerio 0.00001 57
ENSDART00000031485 zgc:113418-201 protein_coding Danio_rerio 0.00001 57
ENSDART00000111236 zgc:171220-201 protein_coding Danio_rerio 0.00001 57
ENSDART00000041282 zgc:171220-001 protein_coding Danio_rerio 0.00001 57
ENSDART00000111006 zgc:113100-203 protein_coding Danio_rerio 0.00001 57
ENSDART00000128960 CR548626.3-201 protein_coding Danio_rerio 0.00001 57
ENSDART00000140121 si:ch211-235i11.5-201 protein_coding Danio_rerio 0.00001 57
ENSDART00000157095 si:ch211-235i11.5-001 protein_coding Danio_rerio 0.00001 57
ENSDART00000050843 CR847941.1-201 protein_coding Danio_rerio 0.00005 55
ENSDART00000106497 zgc:113389-202 protein_coding Danio_rerio 0.00005 55
ENSDART00000073710 zgc:113389-201 protein_coding Danio_rerio 0.00005 55
ENSDART00000130806 zgc:113389-203 protein_coding Danio_rerio 0.00005 55
ENSDART00000075159 zgc:113377-001 protein_coding Danio_rerio 0.00005 55
ENSDART00000063574 zgc:113336-201 protein_coding Danio_rerio 0.00005 55
ENSDART00000125238 zgc:113100-205 protein_coding Danio_rerio 0.00005 55
ENSDART00000074170 zgc:113100-202 protein_coding Danio_rerio 0.00005 55
ENSDART00000106620 zgc:174224-201 protein_coding Danio_rerio 0.00005 55
ENSDART00000154478 si:dkey-5i16.5-002 protein_coding Danio_rerio 0.00005 55
ENSDART00000147881 BX640537.2-201 protein_coding Danio_rerio 0.00005 55
ENSDART00000089972 zgc:113389-205 protein_coding Danio_rerio 0.00005 55
ENSDART00000073711 zgc:113389-204 protein_coding Danio_rerio 0.00005 55
ENSDART00000063571 zgc:112958-201 protein_coding Danio_rerio 0.00005 55
ENSDART00000150350 si:dkey-56m15.6-001 protein_coding Danio_rerio 0.0002 53
ENSDART00000150859 si:dkey-238o14.8-001 protein_coding Danio_rerio 0.0002 53
ENSDART00000153906 si:dkey-1b17.2-201 protein_coding Danio_rerio 0.0002 53
ENST00000221315 ZNF432-001 protein_coding Homo_sapiens 0.00001 57
ENST00000293725 ZNF563-001 protein_coding Homo_sapiens 0.00000000001 77
ENST00000355504 ZNF493-003 protein_coding Homo_sapiens 0.00000004 66
ENST00000355650 ZNF253-002 protein_coding Homo_sapiens 0.0000002 62
ENST00000359788 ZNF675-001 protein_coding Homo_sapiens 0.0000002 62
ENST00000391958 ZNF233-001 protein_coding Homo_sapiens 0.00005 55
ENST00000392288 ZNF493-002 protein_coding Homo_sapiens 0.00000004 66
ENST00000436625 ZNF680P1-001 processed_pseudogene Homo_sapiens 0.0000002 62
ENST00000510175 ZNF718-002 protein_coding Homo_sapiens 0.000001 60
ENST00000589717 ZNF253-001 protein_coding Homo_sapiens 0.0000004 62
ENST00000592581 ZNF233-002 protein_coding Homo_sapiens 0.00005 55
ENST00000594154 ZNF432-002 protein_coding Homo_sapiens 0.00002 57
ENST00000595195 CTD-2542C24.2-001 unprocessed_pseudogene Homo_sapiens 0.00001 57
ENST00000597606 CTD-2126E3.5-001 processed_pseudogene Homo_sapiens 3e-24 117
ENST00000600299 ZNF675-002 retained_intron Homo_sapiens 0.0000005 62
ENST00000609714 ZNF718-005 protein_coding Homo_sapiens 0.000001 60
ENST00000622720 CTD-2542C24.14-001 unprocessed_pseudogene Homo_sapiens 0.00001 57
ENST00000623497 CTD-2542C24.14-001 unprocessed_pseudogene Homo_sapiens 0.00001 57

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