C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoic acid receptor, gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000063339 Rarg-002 ENSMUSG00000001288 10090 - 15:102234940-102246500 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000063339
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000063339 17.452±2.61 9.936±2.84 9.336±2.98 2.562±0.47 20.762±3.69 10.944±2.83 5.838±2.45 6.139±0.80 1.928±0.46 20.451±9.10 2.889±0.65 17.826±4.68 3.040±1.52 1.074±0.24

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00060L CIL_00060L_0002 CGP 15:102215995-102257517
CIL_00060M CIL_00060M_0002 CGP 15:102234938-102281744

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001843 IGI neural tube closure
GO:0002063 IMP chondrocyte development
GO:0002068 IGI glandular epithelial cell development
GO:0003406 IGI retinal pigment epithelium development
GO:0003417 IGI growth plate cartilage development
GO:0003430 IMP growth plate cartilage chondrocyte growth
GO:0003677 IC DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0008284 IGI positive regulation of cell proliferation
GO:0008285 IGI negative regulation of cell proliferation
GO:0009952 IGI anterior/posterior pattern specification
GO:0010468 IGI regulation of gene expression
GO:0010628 IDA positive regulation of gene expression
GO:0031076 IGI embryonic camera-type eye development
GO:0032331 IMP negative regulation of chondrocyte differentiation
GO:0035116 IGI embryonic hindlimb morphogenesis
GO:0035264 IGI multicellular organism growth
GO:0043010 IGI camera-type eye development
GO:0043065 IGI positive regulation of apoptotic process
GO:0043066 IGI negative regulation of apoptotic process
GO:0043068 IGI positive regulation of programmed cell death
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0045596 IMP negative regulation of cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046965 IMP retinoid X receptor binding
GO:0048048 IGI embryonic eye morphogenesis
GO:0048384 IMP retinoic acid receptor signaling pathway
GO:0048608 IMP reproductive structure development
GO:0048732 IMP gland development
GO:0060041 IGI retina development in camera-type eye
GO:0060173 IMP limb development
GO:0060324 IGI face development
GO:0060348 IMP bone development
GO:0060349 IGI bone morphogenesis
GO:0060429 IMP epithelium development
GO:0060534 IMP trachea cartilage development
GO:0060740 IMP prostate gland epithelium morphogenesis
GO:0061037 IMP negative regulation of cartilage development
GO:0070384 IMP Harderian gland development
GO:0071300 IDA cellular response to retinoic acid

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000099040 nr1d2a-201 protein_coding Danio_rerio 0.000000006 68
ENSDART00000153675 nr1d2a-202 protein_coding Danio_rerio 0.000000006 68
ENSDART00000128167 nr1d2a-001 protein_coding Danio_rerio 0.000000006 68
ENSDART00000148588 nr1d2a-002 retained_intron Danio_rerio 0.000000006 68
ENST00000338561 RARG-004 protein_coding Homo_sapiens 0 2150
ENST00000394426 RARG-201 protein_coding Homo_sapiens 0 2375
ENST00000425354 RARG-001 protein_coding Homo_sapiens 0 2377
ENST00000543726 RARG-005 protein_coding Homo_sapiens 0 1555
ENST00000543762 RARG-002 processed_transcript Homo_sapiens 0 1519
ENST00000548284 RARG-015 retained_intron Homo_sapiens 0 383
ENST00000548317 RARG-018 retained_intron Homo_sapiens 0 481
ENST00000550265 RARG-003 retained_intron Homo_sapiens 0 1397

Loading