C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00061I_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000157103-ENSG00000196639 CGP 9606 3:10992724-11263557
GeneTranscriptPositionBiotype
ENSG00000157103 (SLC6A1)
solute carrier family 6 (neurotransmitter transporter), member 1 		ENST00000287766 (SLC6A1-001) 10992724-11039247 protein_coding
ENST00000425938 (SLC6A1-002) 10992728-11017327 protein_coding
ENST00000460480 (SLC6A1-004) 11017116-11022437 processed_transcript
ENST00000462473 (SLC6A1-003) 10992734-11017876 processed_transcript
ENST00000495636 (SLC6A1-005) 11033237-11037278 retained_intron
ENSG00000196639 (HRH1)
histamine receptor H1 		ENST00000397056 (HRH1-001) 11252699-11263557 protein_coding
ENST00000413416 (HRH1-004) 11226031-11259075 protein_coding
ENST00000431010 (HRH1-003) 11154528-11263253 protein_coding
ENST00000438284 (HRH1-002) 11137093-11260775 protein_coding
ENSG00000232287 (SLC6A1-AS1)
SLC6A1 antisense RNA 1 		ENST00000414969 (SLC6A1-AS1-001) 11006098-11019224 antisense
CIL_00061I_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000030310-ENSMUSG00000053004 CGP 10090 6:114282635-114483296
GeneTranscriptPositionBiotype
ENSMUSG00000030310 (Slc6a1)
solute carrier family 6 (neurotransmitter transporter, GABA), member 1 		ENSMUST00000032454 (Slc6a1-201) 114282635-114317522 protein_coding
ENSMUSG00000053004 (Hrh1)
histamine receptor H1 		ENSMUST00000088987 (Hrh1-001) 114397936-114483296 protein_coding
ENSMUST00000160212 (Hrh1-004) 114398086-114479866 protein_coding
ENSMUST00000160780 (Hrh1-005) 114458519-114482468 protein_coding
ENSMUST00000161220 (Hrh1-003) 114403825-114482404 protein_coding
ENSMUST00000161650 (Hrh1-002) 114403666-114482479 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00061I_0001ENSG00000157103ENST00000287766ENST00000425938ENST00000460480ENST00000462473ENST00000495636ENSG00000196639ENST00000397056ENST00000413416ENST00000431010ENST00000438284ENSG00000232287ENST00000414969CIL_00061I_0002ENSMUSG00000030310ENSMUST00000032454ENSMUSG00000053004ENSMUST00000088987ENSMUST00000160212ENSMUST00000160780ENSMUST00000161220ENSMUST00000161650
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00061I_0001ENSG00000157103ENST00000287766ENST00000460480ENSG00000196639ENST00000397056ENST00000413416ENST00000431010ENST00000438284ENSG00000232287ENST00000414969CIL_00061I_0002ENSMUSG00000030310ENSMUST00000032454ENSMUSG00000053004ENSMUST00000088987ENSMUST00000160212ENSMUST00000160780ENSMUST00000161220ENSMUST00000161650
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000157103 ENST00000287766 N/A N/A 0.093±0.00 9.310±0.00 0.296±0.09 0.012±0.00 N/A 11.050±10.69 1.929±1.83 0.132±0.00 N/A 0.267±0.00 0.195±0.04 N/A
ENST00000425938 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460480 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.616±0.00 N/A 1.477±0.00 N/A N/A
ENST00000462473 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196639 ENST00000397056 N/A 0.115±0.00 N/A 0.245±0.00 N/A 0.681±0.00 0.081±0.00 N/A N/A 1.029±0.00 0.153±0.00 0.429±0.13 0.374±0.00 N/A
ENST00000413416 N/A N/A N/A N/A 1.754±0.00 0.939±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000431010 1.166±0.00 0.845±0.00 0.020±0.00 1.287±0.06 1.280±0.19 2.058±1.26 0.192±0.00 0.730±0.00 0.774±0.70 6.991±0.00 0.305±0.27 1.126±0.56 1.358±0.52 1.061±0.99
ENST00000438284 N/A N/A 0.108±0.00 N/A N/A 0.294±0.00 N/A N/A N/A N/A 0.128±0.00 1.304±0.79 2.280±0.00 0.502±0.00
ENSG00000232287 ENST00000414969 N/A 0.031±0.00 N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A 0.091±0.00 N/A 0.315±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030310 ENSMUST00000032454 0.017±0.01 0.010±0.00 0.016±0.01 55.636±15.09 0.179±0.06 0.136±0.02 0.019±0.01 0.013±0.00 0.037±0.05 0.075±0.01 0.054±0.04 0.029±0.01 0.136±0.15 0.083±0.04
ENSMUSG00000053004 ENSMUST00000088987 N/A N/A N/A N/A 0.156±0.07 0.972±0.00 N/A N/A 0.005±0.00 N/A 0.034±0.03 0.042±0.00 N/A N/A
ENSMUST00000160212 N/A N/A N/A N/A N/A N/A 0.083±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160780 0.537±0.11 0.415±0.06 0.317±0.04 1.158±1.45 0.602±0.15 2.336±0.62 0.080±0.06 0.139±0.05 0.030±0.01 0.241±0.05 0.098±0.04 0.312±0.16 0.049±0.03 0.156±0.10
ENSMUST00000161220 0.126±0.00 N/A N/A N/A 0.311±0.00 2.047±0.71 N/A 0.188±0.00 N/A 0.310±0.00 0.045±0.04 0.335±0.24 0.028±0.00 0.090±0.00
ENSMUST00000161650 0.147±0.03 0.177±0.00 N/A 0.479±0.00 N/A N/A 0.116±0.00 N/A N/A N/A N/A 0.347±0.00 N/A N/A

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