C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: solute carrier family 6 (neurotransmitter transporter, GABA), member 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000030310 Slc6a1 10090 + 6:114282635-114317522 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000032454 Slc6a1-201 114282635-114317522 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000032454
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000032454 0.017±0.01 0.010±0.00 0.016±0.01 55.636±15.09 0.179±0.06 0.136±0.02 0.019±0.01 0.013±0.00 0.037±0.05 0.075±0.01 0.054±0.04 0.029±0.01 0.136±0.15 0.083±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LQ CIL_0001LQ_0002 CGP 6:114131241-114317522
CIL_00061I CIL_00061I_0002 CGP 6:114282635-114483296

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005332 IEA gamma-aminobutyric acid:sodium symporter activity
GO:0005515 IEA protein binding
GO:0005886 IDA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0007612 IEA learning
GO:0009636 IEA response to toxic substance
GO:0009744 IEA response to sucrose
GO:0009986 IEA cell surface
GO:0010033 IEA response to organic substance
GO:0010243 IEA response to organonitrogen compound
GO:0010288 IEA response to lead ion
GO:0014054 IEA positive regulation of gamma-aminobutyric acid secretion
GO:0014070 IEA response to organic cyclic compound
GO:0014074 IEA response to purine-containing compound
GO:0030424 IDA axon
GO:0032229 IEA negative regulation of synaptic transmission, GABAergic
GO:0032355 IEA response to estradiol
GO:0042220 IEA response to cocaine
GO:0043005 IEA neuron projection
GO:0051260 IEA protein homooligomerization
GO:0051592 IEA response to calcium ion
GO:0051939 IEA gamma-aminobutyric acid import
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000039647 slc6a1b solute carrier family 6 (neurotransmitter transporter, GABA), member 1b protein_coding Danio_rerio
ENSDARG00000045944 slc6a1a solute carrier family 6 (neurotransmitter transporter, GABA), member 1a protein_coding Danio_rerio
ENSG00000157103 SLC6A1 solute carrier family 6 (neurotransmitter transporter), member 1 protein_coding Homo_sapiens

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