C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: catenin (cadherin-associated protein), alpha 1, 102kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000521724 CTNNA1-003 ENSG00000044115 9606 + 5:138753421-138934213 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000521724
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000521724 25.933±0.00 6.498±0.00 20.391±5.88 16.677±0.00 7.426±0.00 13.240±7.82 5.322±0.00 23.767±14.44 13.161±0.00 10.069±3.24 27.706±0.00 12.375±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005DA CIL_0005DA_0001 CGP 5:138554882-138935034
CIL_00062R CIL_00062R_0002 CGP 5:138610967-138935034

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0007155 IEA cell adhesion
GO:0015629 IEA actin cytoskeleton
GO:0051015 IEA actin filament binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000042345 Ctnna1-201 protein_coding Mus_musculus 0 3345
ENSMUST00000075340 Ctnna2-201 protein_coding Mus_musculus 0 1131
ENSMUST00000161846 Ctnna2-001 protein_coding Mus_musculus 0 1131
ENSDART00000101306 ctnna2-002 protein_coding Danio_rerio 0 1088
ENSMUST00000159626 Ctnna2-003 protein_coding Mus_musculus 0 1027
ENSMUST00000160894 Ctnna2-002 protein_coding Mus_musculus 0 1027
ENSDART00000153506 ctnna2-202 protein_coding Danio_rerio 0 793

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