C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00064U_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135929-ENSG00000115592 CGP 9606 2:218781749-218832086
GeneTranscriptPositionBiotype
ENSG00000115592 (PRKAG3)
protein kinase, AMP-activated, gamma 3 non-catalytic subunit 		ENST00000233944 (PRKAG3-001) 218822383-218831816 nonsense_mediated_decay
ENST00000430489 (PRKAG3-005) 218830299-218831801 protein_coding
ENST00000439262 (PRKAG3-201) 218822383-218831791 protein_coding
ENST00000470307 (PRKAG3-003) 218824363-218831803 nonsense_mediated_decay
ENST00000490971 (PRKAG3-002) 218826635-218831803 retained_intron
ENST00000529249 (PRKAG3-006) 218823326-218832086 protein_coding
ENSG00000135929 (CYP27A1)
cytochrome P450, family 27, subfamily A, polypeptide 1 		ENST00000258415 (CYP27A1-001) 218781756-218815293 protein_coding
ENST00000411688 (CYP27A1-005) 218805914-218813025 protein_coding
ENST00000445971 (CYP27A1-004) 218782153-218814067 nonsense_mediated_decay
ENST00000466602 (CYP27A1-003) 218782174-218814091 retained_intron
ENST00000494263 (CYP27A1-002) 218781749-218815288 retained_intron
ENSG00000272555 (RP11-459I19.1)
 ENST00000608881 (RP11-459I19.1-001) 218818690-218819144 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_00064U_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026170-ENSMUSG00000006542 CGP 10090 1:74713574-74749221
GeneTranscriptPositionBiotype
ENSMUSG00000006542 (Prkag3)
protein kinase, AMP-activated, gamma 3 non-catatlytic subunit 		ENSMUST00000081636 (Prkag3-001) 74740205-74749221 protein_coding
ENSMUST00000113672 (Prkag3-002) 74740205-74748577 protein_coding
ENSMUST00000159728 (Prkag3-003) 74747518-74748904 nonsense_mediated_decay
ENSMUST00000160732 (Prkag3-004) 74738922-74748955 nonsense_mediated_decay
ENSMUST00000162093 (Prkag3-005) 74741467-74748867 nonsense_mediated_decay
ENSMUST00000188073 (Prkag3-201) 74738922-74748955 protein_coding
ENSMUSG00000026170 (Cyp27a1)
cytochrome P450, family 27, subfamily a, polypeptide 1 		ENSMUST00000027356 (Cyp27a1-001) 74713574-74737892 protein_coding
ENSMUST00000189083 (Cyp27a1-003) 74736809-74737823 retained_intron
ENSMUST00000190781 (Cyp27a1-002) 74735351-74736716 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00064U_0001ENSG00000115592ENST00000233944ENST00000430489ENST00000439262ENST00000470307ENST00000490971ENST00000529249ENSG00000135929ENST00000258415ENST00000411688ENST00000445971ENST00000466602ENST00000494263ENSG00000272555ENST00000608881CIL_00064U_0002ENSMUSG00000006542ENSMUST00000081636ENSMUST00000113672ENSMUST00000159728ENSMUST00000160732ENSMUST00000162093ENSMUST00000188073ENSMUSG00000026170ENSMUST00000027356ENSMUST00000189083ENSMUST00000190781
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00064U_0001ENSG00000115592ENST00000233944ENST00000439262ENST00000470307ENST00000529249ENSG00000135929ENST00000258415ENST00000411688ENST00000494263ENSG00000272555ENST00000608881CIL_00064U_0002ENSMUSG00000006542ENSMUST00000081636ENSMUST00000113672ENSMUST00000159728ENSMUST00000162093ENSMUST00000188073ENSMUSG00000026170ENSMUST00000027356ENSMUST00000189083ENSMUST00000190781
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115592 ENST00000233944 N/A N/A N/A N/A 0.886±0.00 N/A 0.002±0.00 N/A N/A N/A N/A 0.002±0.00 N/A N/A
ENST00000430489 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439262 N/A 0.045±0.00 N/A 0.061±0.00 N/A N/A 0.037±0.03 N/A N/A N/A 8.510±1.31 0.009±0.00 N/A 0.230±0.00
ENST00000470307 N/A N/A N/A N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000490971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000529249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.054±0.00 N/A 0.090±0.00
ENSG00000135929 ENST00000258415 12.564±0.00 10.205±0.00 2.189±0.00 10.576±8.64 9.156±8.00 20.283±0.00 2.940±1.74 44.882±34.19 177.647±0.00 26.730±21.31 9.585±0.00 18.075±15.90 2.625±1.35 7.754±4.50
ENST00000411688 N/A N/A N/A N/A N/A N/A N/A N/A 1.068±0.00 N/A N/A 20.244±0.00 3.106±0.00 4.000±0.00
ENST00000445971 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494263 N/A N/A N/A N/A N/A 0.655±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000272555 ENST00000608881 0.171±0.00 0.047±0.00 N/A 0.048±0.00 0.308±0.00 0.331±0.00 0.045±0.00 0.487±0.40 0.845±0.00 0.246±0.00 0.438±0.00 0.362±0.29 N/A 0.118±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000006542 ENSMUST00000081636 0.144±0.00 N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A 0.130±0.07 N/A 0.080±0.00
ENSMUST00000113672 0.548±0.48 0.168±0.00 0.094±0.00 N/A 0.074±0.00 0.093±0.02 0.163±0.00 N/A 0.008±0.01 N/A N/A 0.095±0.00 0.015±0.00 0.088±0.05
ENSMUST00000159728 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.117±0.00 N/A
ENSMUST00000160732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162093 N/A 0.106±0.05 N/A N/A N/A 0.123±0.04 N/A N/A 0.032±0.00 N/A N/A N/A 0.042±0.00 N/A
ENSMUST00000188073 1.407±1.32 0.082±0.02 0.248±0.12 0.145±0.11 3.920±3.09 0.138±0.07 0.544±0.14 0.735±0.36 0.051±0.03 1.761±1.02 78.541±6.71 0.267±0.15 0.091±0.08 0.204±0.09
ENSMUSG00000026170 ENSMUST00000027356 12.528±0.88 2.644±0.60 18.150±6.05 0.530±0.47 5.988±0.59 5.930±1.37 3.341±1.11 8.638±1.37 60.235±56.37 6.323±0.71 38.047±8.47 4.849±2.23 1.257±0.91 1.963±0.21
ENSMUST00000189083 N/A N/A N/A 2.303±0.00 N/A N/A N/A N/A N/A N/A N/A 7.016±0.00 0.528±0.01 0.847±0.00
ENSMUST00000190781 N/A N/A 21.820±0.00 N/A N/A N/A N/A N/A 8.625±1.31 N/A 24.333±0.00 10.542±0.00 N/A N/A

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