C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006EE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000213901-ENSG00000115649 CGP 9606 2:219075329-219178106
GeneTranscriptPositionBiotype
ENSG00000115649 (CNPPD1)
cyclin Pas1/PHO80 domain containing 1 		ENST00000360507 (CNPPD1-001) 219171897-219176966 protein_coding
ENST00000409789 (CNPPD1-003) 219172174-219178106 protein_coding
ENST00000451647 (CNPPD1-005) 219173051-219176898 protein_coding
ENST00000453038 (CNPPD1-004) 219172894-219177313 protein_coding
ENSG00000144567 (FAM134A)
family with sequence similarity 134, member A 		ENST00000273048 (FAM134A-002) 219178227-219183492 nonsense_mediated_decay
ENST00000420189 (FAM134A-004) 219181678-219183800 protein_coding
ENST00000430297 (FAM134A-001) 219178217-219185479 protein_coding
ENST00000430747 (FAM134A-008) 219178714-219180750 protein_coding
ENST00000443757 (FAM134A-006) 219177923-219180751 protein_coding
ENST00000452022 (FAM134A-009) 219178727-219181663 protein_coding
ENST00000452293 (FAM134A-007) 219178277-219180754 nonsense_mediated_decay
ENST00000458520 (FAM134A-005) 219176225-219182120 protein_coding
ENST00000465672 (FAM134A-010) 219178986-219180239 retained_intron
ENST00000481925 (FAM134A-011) 219180668-219181693 retained_intron
ENSG00000187736 (NHEJ1)
nonhomologous end-joining factor 1 		ENST00000356853 (NHEJ1-001) 219075321-219160853 protein_coding
ENST00000409720 (NHEJ1-004) 219075317-219158362 protein_coding
ENST00000418099 (NHEJ1-006) 219075329-219160798 nonsense_mediated_decay
ENST00000426304 (NHEJ1-009) 219076303-219157621 protein_coding
ENST00000450447 (NHEJ1-005) 219146707-219160865 nonsense_mediated_decay
ENST00000457600 (NHEJ1-008) 219078107-219160555 protein_coding
ENST00000481764 (NHEJ1-007) 219158820-219160762 processed_transcript
ENST00000483627 (NHEJ1-010) 219076378-219125660 processed_transcript
ENST00000491159 (NHEJ1-002) 219076318-219125652 processed_transcript
ENST00000494211 (NHEJ1-003) 219076292-219124764 processed_transcript
ENSG00000213901 (SLC23A3)
solute carrier family 23, member 3 		ENST00000295738 (SLC23A3-001) 219161465-219170095 protein_coding
ENST00000318673 (SLC23A3-003) 219075973-219169987 nonsense_mediated_decay
ENST00000409370 (SLC23A3-008) 219168214-219169990 protein_coding
ENST00000409878 (SLC23A3-010) 219161765-219170017 protein_coding
ENST00000414999 (SLC23A3-011) 219167929-219169562 nonsense_mediated_decay
ENST00000421779 (SLC23A3-004) 219168784-219170035 nonsense_mediated_decay
ENST00000430764 (SLC23A3-007) 219168652-219170004 protein_coding
ENST00000455516 (SLC23A3-005) 219161766-219170032 protein_coding
ENST00000461812 (SLC23A3-006) 219169355-219170029 retained_intron
ENST00000465580 (SLC23A3-009) 219168637-219170033 retained_intron
ENST00000497918 (SLC23A3-002) 219164578-219170057 retained_intron
ENST00000498327 (SLC23A3-012) 219075329-219170827 retained_intron
ENSG00000240317 (RN7SL764P)
RNA, 7SL, cytoplasmic 764, pseudogene 		ENST00000487337 (RN7SL764P-201) 219102434-219102719 misc_RNA

Homo sapiens Ensembl (GRCh38)

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CIL_0006EE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026205-ENSMUSG00000033159 CGP 10090 1:75125541-75142711
GeneTranscriptPositionBiotype
ENSMUSG00000026205 (Slc23a3)
solute carrier family 23 (nucleobase transporters), member 3 		ENSMUST00000027405 (Slc23a3-001) 75125541-75133890 protein_coding
ENSMUST00000188080 (Slc23a3-003) 75131713-75133546 retained_intron
ENSMUSG00000033159 (Cnppd1)
cyclin Pas1/PHO80 domain containing 1 		ENSMUST00000041213 (Cnppd1-002) 75135771-75142697 protein_coding
ENSMUST00000168720 (Cnppd1-001) 75134554-75142638 protein_coding
ENSMUST00000187888 (Cnppd1-007) 75136785-75137861 retained_intron
ENSMUST00000188037 (Cnppd1-008) 75137092-75137806 retained_intron
ENSMUST00000189043 (Cnppd1-004) 75135771-75138876 retained_intron
ENSMUST00000189403 (Cnppd1-006) 75139347-75141803 protein_coding
ENSMUST00000189809 (Cnppd1-005) 75139597-75142711 protein_coding
ENSMUST00000190679 (Cnppd1-003) 75135768-75141691 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006EE_0001ENSG00000115649ENST00000360507ENST00000409789ENSG00000144567ENST00000273048ENST00000420189ENST00000430297ENST00000452022ENST00000458520ENSG00000187736ENST00000356853ENST00000409720ENST00000426304ENST00000450447ENST00000457600ENSG00000213901ENST00000295738ENST00000318673ENST00000498327ENSG00000240317ENST00000487337CIL_0006EE_0002ENSMUSG00000026205ENSMUST00000027405ENSMUST00000188080ENSMUSG00000033159ENSMUST00000041213ENSMUST00000168720ENSMUST00000189043ENSMUST00000189809ENSMUST00000190679
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115649 ENST00000360507 44.097±0.00 33.873±0.00 5.906±0.00 26.672±0.00 43.240±0.00 18.451±14.43 10.964±8.69 47.845±42.80 5.473±2.57 12.060±7.56 37.589±33.50 34.451±19.16 36.081±3.02 48.667±1.91
ENST00000409789 N/A N/A N/A N/A N/A N/A N/A N/A 2.880±0.00 N/A N/A N/A N/A N/A
ENST00000451647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453038 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000144567 ENST00000273048 16.502±0.00 11.877±0.00 2.552±0.00 27.873±13.07 12.993±0.00 7.821±6.61 3.144±2.46 14.507±7.05 6.078±2.84 7.255±4.49 15.065±0.00 13.977±8.66 13.803±5.12 54.606±7.40
ENST00000420189 N/A 12.228±0.00 N/A 17.459±0.00 10.557±0.00 11.759±0.00 4.125±0.00 21.622±0.00 8.788±0.00 8.459±0.00 N/A 15.177±1.61 11.028±1.92 37.017±2.90
ENST00000430297 8.027±0.00 6.583±0.00 1.197±0.00 4.675±0.09 5.063±1.53 2.535±0.75 1.686±0.72 N/A 2.391±0.41 3.242±0.00 0.314±0.00 4.723±2.10 4.240±0.45 N/A
ENST00000430747 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443757 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.890±0.00 8.160±0.00 N/A N/A
ENST00000452293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458520 N/A N/A N/A 19.073±0.00 5.057±0.00 2.821±0.00 2.056±0.00 N/A N/A N/A N/A 3.542±0.00 N/A N/A
ENST00000465672 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187736 ENST00000356853 2.678±0.00 4.910±0.00 N/A 1.683±0.00 2.657±0.00 5.974±1.91 0.969±0.29 3.015±2.52 1.541±0.48 3.388±0.00 9.984±0.00 4.206±2.75 2.537±1.21 4.689±0.00
ENST00000409720 1.104±0.00 N/A N/A N/A N/A N/A 0.395±0.00 N/A N/A 1.742±0.00 1.202±0.00 1.224±0.00 2.088±0.00 5.085±2.28
ENST00000418099 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000426304 N/A N/A N/A 1.236±0.00 3.550±0.00 N/A 0.436±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000450447 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.194±0.00 3.845±0.00 3.410±0.00 N/A
ENST00000457600 N/A N/A N/A N/A N/A N/A 0.710±0.00 N/A N/A N/A N/A 1.645±0.00 N/A 18.246±0.00
ENST00000481764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491159 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213901 ENST00000295738 N/A N/A 2.630±0.00 N/A N/A N/A N/A 3.813±0.00 N/A N/A N/A N/A N/A N/A
ENST00000318673 N/A N/A 2.326±0.00 N/A N/A N/A N/A N/A N/A 0.586±0.00 N/A N/A N/A N/A
ENST00000409370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000409878 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000414999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000421779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000430764 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461812 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000465580 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497918 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498327 N/A N/A N/A N/A N/A N/A N/A 1.187±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000240317 ENST00000487337 N/A 0.209±0.00 N/A N/A N/A 0.066±0.00 0.068±0.00 0.362±0.00 N/A 0.413±0.00 0.130±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026205 ENSMUST00000027405 0.237±0.16 0.219±0.05 0.492±0.08 0.076±0.07 0.190±0.08 1.395±0.43 0.442±0.14 7.609±2.74 0.661±0.57 0.571±0.21 0.045±0.01 1.130±0.55 5.470±5.85 0.031±0.02
ENSMUST00000188080 0.141±0.00 0.093±0.00 N/A N/A 0.264±0.06 N/A N/A N/A 0.016±0.00 N/A 0.123±0.00 1.077±0.31 N/A 0.078±0.00
ENSMUSG00000033159 ENSMUST00000041213 6.243±1.58 9.389±0.77 7.561±2.00 16.638±8.15 6.079±1.65 4.774±0.04 3.904±1.20 8.372±0.79 6.986±1.66 6.214±0.99 5.703±1.32 10.288±3.11 9.895±5.97 13.315±3.82
ENSMUST00000168720 3.185±0.06 2.043±0.22 3.119±0.20 1.218±0.00 N/A 4.772±0.73 0.872±0.24 3.022±0.22 2.204±0.53 3.599±0.28 N/A 3.283±0.82 2.623±0.78 N/A
ENSMUST00000187888 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189043 N/A 3.069±0.00 N/A 3.701±0.47 N/A N/A N/A N/A N/A N/A 1.110±0.03 4.679±0.16 N/A N/A
ENSMUST00000189403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189809 N/A N/A N/A N/A 24.775±0.00 N/A N/A N/A N/A N/A N/A N/A 44.563±0.00 N/A
ENSMUST00000190679 13.135±2.63 6.302±0.13 22.440±4.95 5.308±1.00 22.829±7.71 30.554±2.56 4.145±0.72 17.104±1.19 17.967±10.45 19.018±0.75 2.022±0.24 18.657±8.30 17.572±5.68 5.948±0.82

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