C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 60, member B pseudogene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000578364 FAM60BP-001 ENSG00000263829 9606 - 18:26255698-26256355 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonLungOvaryTestisENST00000578364
Transcript ID Brain Colon Lung Ovary Testis
ENST00000578364 0.118±0.06 0.019±0.00 0.435±0.00 0.197±0.00 0.074±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007LU CIL_0007LU_0001 UCNEbase 18:24628254-26687255
CIL_0000QZ CIL_0000QZ_0001 CGP 18:26133852-26391685
CIL_0006ER CIL_0006ER_0001 CGP 18:26225936-26657401

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165914 Gm9027-001 processed_pseudogene Mus_musculus 0 846
ENSMUST00000111562 Fam60a-007 protein_coding Mus_musculus 0 846
ENSMUST00000081956 Fam60a-002 protein_coding Mus_musculus 0 846
ENSMUST00000054080 Fam60a-001 protein_coding Mus_musculus 0 846
ENSMUST00000132696 Fam60a-006 protein_coding Mus_musculus 0 579
ENSMUST00000139355 Fam60a-005 protein_coding Mus_musculus 0 383
ENSMUST00000146457 Fam60a-004 protein_coding Mus_musculus 0 206
ENSMUST00000143963 Fam60a-008 retained_intron Mus_musculus 1e-39 167

Loading