C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: choline acetyltransferase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070125 Chat-201 ENSMUSG00000021919 10090 - 14:32408203-32465909 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartLiverLungTestisENSMUST00000070125
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Liver Lung Testis
ENSMUST00000070125 0.024±0.00 0.016±0.00 0.036±0.00 0.472±0.34 0.099±0.01 0.337±0.18 0.033±0.01 0.009±0.00 0.038±0.00 0.031±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00084A CIL_00084A_0002 VISTA 14:32298253-32899721
CIL_00002Q CIL_00002Q_0002 CGP 14:32376502-32465909
CIL_0006F1 CIL_0006F1_0003 CGP 14:32408203-32465909

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004102 IMP choline O-acetyltransferase activity
GO:0005739 IDA mitochondrion
GO:0007268 IMP synaptic transmission
GO:0007274 IMP neuromuscular synaptic transmission
GO:0007517 IMP muscle organ development
GO:0007529 IMP establishment of synaptic specificity at neuromuscular junction
GO:0007622 IMP rhythmic behavior
GO:0007628 IMP adult walking behavior
GO:0008152 IEA metabolic process
GO:0016358 IMP dendrite development
GO:0030182 IMP neuron differentiation
GO:0030424 IDA axon
GO:0043005 IDA neuron projection
GO:0043025 IDA neuronal cell body
GO:0043179 IMP rhythmic excitation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337653 CHAT-001 protein_coding Homo_sapiens 0 2113
ENST00000339797 CHAT-007 protein_coding Homo_sapiens 0 2100
ENST00000351556 CHAT-201 protein_coding Homo_sapiens 0 2113
ENST00000395559 CHAT-202 protein_coding Homo_sapiens 0 2100
ENST00000395562 CHAT-203 protein_coding Homo_sapiens 0 2100
ENST00000460699 CHAT-004 processed_transcript Homo_sapiens 0 527
ENST00000466590 CHAT-002 nonsense_mediated_decay Homo_sapiens 0 2100
ENST00000490270 CHAT-003 processed_transcript Homo_sapiens 1.4013e-45 187

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