C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006F4_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125827-ENSG00000182621 CGP 9606 20:7977348-8968356
GeneTranscriptPositionBiotype
ENSG00000125827 (TMX4)
thioredoxin-related transmembrane protein 4 		ENST00000246024 (TMX4-001) 7977348-8019829 protein_coding
ENST00000462384 (TMX4-002) 7987310-8019646 nonsense_mediated_decay
ENST00000527925 (TMX4-003) 7983794-8019805 protein_coding
ENST00000530935 (TMX4-004) 7987324-8013930 processed_transcript
ENSG00000182621 (PLCB1)
phospholipase C, beta 1 (phosphoinositide-specific) 		ENST00000338037 (PLCB1-003) 8132625-8884900 protein_coding
ENST00000378637 (PLCB1-004) 8132649-8802483 protein_coding
ENST00000378641 (PLCB1-005) 8132177-8884900 protein_coding
ENST00000404098 (PLCB1-001) 8132655-8651518 protein_coding
ENST00000437439 (PLCB1-008) 8790178-8792790 protein_coding
ENST00000439627 (PLCB1-007) 8737028-8751236 protein_coding
ENST00000475958 (PLCB1-009) 8649391-8652011 processed_transcript
ENST00000487210 (PLCB1-002) 8658621-8968356 nonsense_mediated_decay
ENST00000494924 (PLCB1-006) 8715862-8788525 processed_transcript
ENST00000612075 (PLCB1-201) 8628288-8884896 protein_coding
ENST00000617005 (PLCB1-202) 8628288-8884896 protein_coding
ENSG00000201348 (RNU105B)
RNA, U105B small nucleolar 		ENST00000364478 (RNU105B-201) 8831186-8831393 snoRNA
ENSG00000225479 (PLCB1-IT1)
PLCB1 intronic transcript 1 (non-protein coding) 		ENST00000441231 (PLCB1-IT1-002) 8248704-8249742 sense_intronic
ENST00000451443 (PLCB1-IT1-001) 8248725-8256918 sense_intronic
ENSG00000229766 (RP5-971N18.3)
 ENST00000457707 (RP5-971N18.3-001) 8019902-8027956 antisense
ENST00000607924 (RP5-971N18.3-002) 8019223-8027725 antisense
ENST00000608601 (RP5-971N18.3-003) 8022626-8043512 antisense
ENSG00000276385 (RP5-859I17.3)
 ENST00000618935 (RP5-859I17.3-001) 8934984-8935481 processed_pseudogene
CIL_0006F4_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034723-ENSMUSG00000051177 CGP 10090 2:134594185-135475258
GeneTranscriptPositionBiotype
ENSMUSG00000034723 (Tmx4)
thioredoxin-related transmembrane protein 4 		ENSMUST00000038228 (Tmx4-001) 134594185-134644145 protein_coding
ENSMUST00000110119 (Tmx4-004) 134639491-134644090 protein_coding
ENSMUST00000110120 (Tmx4-003) 134607466-134644041 protein_coding
ENSMUST00000137377 (Tmx4-002) 134599003-134644132 processed_transcript
ENSMUSG00000051177 (Plcb1)
phospholipase C, beta 1 		ENSMUST00000070724 (Plcb1-003) 134786530-135399675 protein_coding
ENSMUST00000110116 (Plcb1-001) 134786159-135475258 protein_coding
ENSMUST00000129382 (Plcb1-002) 135220718-135262257 processed_transcript
ENSMUST00000130524 (Plcb1-004) 134786175-134989373 retained_intron
ENSMUST00000131552 (Plcb1-005) 135370463-135472144 protein_coding
ENSMUSG00000081243 (Gm14037)
predicted gene 14037 		ENSMUST00000120576 (Gm14037-001) 134730795-134731107 processed_pseudogene
ENSMUSG00000082399 (Gm14036)
predicted gene 14036 		ENSMUST00000118248 (Gm14036-001) 134803949-134804428 processed_pseudogene
ENSMUSG00000083879 (Gm14038)
predicted gene 14038 		ENSMUST00000121500 (Gm14038-001) 134762824-134763630 processed_pseudogene
ENSMUSG00000085247 (4930545L23Rik)
RIKEN cDNA 4930545L23 gene 		ENSMUST00000138303 (4930545L23Rik-001) 135169573-135215616 antisense
ENSMUSG00000085631 (9630028H03Rik)
RIKEN cDNA 9630028H03 gene 		ENSMUST00000129868 (9630028H03Rik-002) 135580530-135583296 antisense
ENSMUST00000153402 (9630028H03Rik-001) 135325447-135583584 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006F4_0001ENSG00000125827ENST00000246024ENST00000462384ENST00000527925ENST00000530935ENSG00000182621ENST00000338037ENST00000378637ENST00000378641ENST00000404098ENST00000437439ENST00000439627ENST00000475958ENST00000487210ENST00000494924ENST00000612075ENST00000617005ENSG00000201348ENST00000364478ENSG00000225479ENST00000441231ENST00000451443ENSG00000229766ENST00000457707ENST00000607924ENST00000608601ENSG00000276385ENST00000618935CIL_0006F4_0002ENSMUSG00000034723ENSMUST00000038228ENSMUST00000110119ENSMUST00000110120ENSMUST00000137377ENSMUSG00000051177ENSMUST00000070724ENSMUST00000110116ENSMUST00000129382ENSMUST00000130524ENSMUST00000131552ENSMUSG00000081243ENSMUST00000120576ENSMUSG00000082399ENSMUST00000118248ENSMUSG00000083879ENSMUST00000121500ENSMUSG00000085247ENSMUST00000138303ENSMUSG00000085631ENSMUST00000129868ENSMUST00000153402
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006F4_0001ENSG00000125827ENST00000246024ENSG00000182621ENST00000338037ENST00000378637ENST00000378641ENST00000404098ENST00000487210ENST00000612075ENST00000617005ENSG00000201348ENST00000364478ENSG00000225479ENST00000441231ENST00000451443ENSG00000229766ENST00000457707ENSG00000276385ENST00000618935CIL_0006F4_0002ENSMUSG00000034723ENSMUST00000038228ENSMUST00000110119ENSMUST00000137377ENSMUSG00000051177ENSMUST00000070724ENSMUST00000110116ENSMUST00000130524ENSMUST00000131552ENSMUSG00000081243ENSMUST00000120576ENSMUSG00000082399ENSMUST00000118248ENSMUSG00000083879ENSMUST00000121500ENSMUSG00000085247ENSMUST00000138303ENSMUSG00000085631ENSMUST00000129868
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125827 ENST00000246024 12.729±0.00 10.177±0.00 5.935±0.00 17.421±1.62 7.414±0.65 9.135±4.82 21.794±12.27 8.550±5.20 8.012±2.45 6.538±2.51 7.955±4.18 9.097±3.49 6.300±1.94 58.681±28.52
ENST00000462384 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000527925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530935 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000182621 ENST00000338037 N/A N/A 0.387±0.00 5.338±3.27 N/A 0.991±0.00 0.285±0.17 N/A 0.436±0.23 N/A N/A 2.107±0.00 0.364±0.12 N/A
ENST00000378637 0.458±0.00 N/A 1.879±0.00 8.070±0.00 2.279±0.00 N/A 0.311±0.00 N/A 1.791±0.00 1.286±0.00 N/A 1.577±0.00 N/A 0.373±0.00
ENST00000378641 1.345±0.00 0.344±0.00 0.914±0.00 5.582±1.26 1.322±0.76 N/A 0.577±0.00 2.165±0.00 1.752±0.00 1.087±0.35 0.580±0.06 1.841±0.68 0.658±0.29 N/A
ENST00000404098 N/A N/A 8.527±0.00 N/A N/A 5.515±0.00 N/A N/A 12.837±0.00 N/A 8.335±0.00 11.336±0.00 N/A N/A
ENST00000437439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000439627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000475958 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487210 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.238±0.00 N/A N/A
ENST00000494924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612075 N/A 1.115±0.00 N/A 5.414±0.00 1.025±0.00 1.702±0.94 N/A N/A 0.380±0.00 0.894±0.00 N/A 1.357±0.15 0.441±0.19 1.586±0.00
ENST00000617005 N/A N/A N/A 6.376±0.00 N/A 1.230±0.00 N/A 0.795±0.00 N/A N/A N/A N/A 1.206±0.00 0.256±0.00
ENSG00000201348 ENST00000364478 N/A N/A N/A N/A N/A N/A 0.151±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000225479 ENST00000441231 N/A N/A N/A N/A N/A N/A N/A N/A 1.544±0.00 N/A N/A N/A N/A 0.350±0.09
ENST00000451443 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.304±0.13
ENSG00000229766 ENST00000457707 0.012±0.00 N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A 0.041±0.00 N/A 0.018±0.01 N/A 2.184±1.31
ENST00000607924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000608601 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000276385 ENST00000618935 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.329±0.00 N/A N/A N/A 0.029±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034723 ENSMUST00000038228 3.660±0.88 6.223±1.25 2.534±1.69 10.446±5.69 3.233±0.39 1.969±0.51 8.635±0.52 4.112±0.29 3.265±1.45 5.195±0.40 2.068±0.17 8.139±3.50 2.761±0.78 9.550±0.74
ENSMUST00000110119 N/A 30.683±7.93 N/A N/A N/A 4.600±0.76 N/A N/A 1.603±0.35 N/A N/A 10.001±3.42 N/A N/A
ENSMUST00000110120 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137377 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.042±0.00 N/A N/A
ENSMUSG00000051177 ENSMUST00000070724 N/A N/A N/A 27.097±0.00 0.603±0.38 N/A 0.139±0.00 N/A 0.178±0.00 N/A N/A 0.403±0.00 0.108±0.02 0.282±0.14
ENSMUST00000110116 1.594±0.23 3.625±0.48 0.401±0.06 10.292±10.30 0.833±0.27 0.728±0.42 0.489±0.12 1.178±0.44 0.379±0.20 2.095±0.95 0.165±0.07 0.747±0.26 0.107±0.09 0.266±0.11
ENSMUST00000129382 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130524 N/A 49.825±6.99 N/A N/A 4.504±0.14 2.505±0.32 N/A N/A 0.563±0.18 3.833±0.99 N/A 3.537±1.42 N/A N/A
ENSMUST00000131552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.752±0.00 0.634±0.31 6.429±0.00
ENSMUSG00000081243 ENSMUST00000120576 N/A 0.538±0.00 N/A N/A 0.795±0.00 N/A 0.231±0.00 N/A N/A N/A N/A N/A N/A 0.394±0.15
ENSMUSG00000082399 ENSMUST00000118248 0.154±0.05 0.254±0.10 0.378±0.05 0.913±0.74 0.317±0.00 N/A 0.112±0.00 0.207±0.10 1.713±1.99 N/A 0.134±0.04 0.280±0.08 0.229±0.08 N/A
ENSMUSG00000083879 ENSMUST00000121500 0.333±0.19 0.420±0.09 0.229±0.18 0.815±0.79 0.628±0.17 0.551±0.31 0.419±0.18 0.257±0.14 0.358±0.18 0.483±0.21 0.067±0.01 0.743±0.32 0.048±0.01 0.130±0.09
ENSMUSG00000085247 ENSMUST00000138303 0.043±0.01 0.045±0.00 0.022±0.00 0.006±0.00 0.032±0.02 0.040±0.00 0.010±0.00 0.035±0.02 0.021±0.01 0.100±0.08 N/A 0.106±0.05 0.008±0.00 2.508±1.41
ENSMUSG00000085631 ENSMUST00000129868 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A
ENSMUST00000153402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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