C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SEC63-like (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000019937 Sec63-001 ENSMUSG00000019802 10090 + 10:42761496-42832514 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000019937
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000019937 5.829±1.03 4.983±1.24 16.874±0.85 12.022±4.67 3.314±0.72 3.657±1.42 3.544±0.26 6.484±1.02 9.353±1.84 8.889±1.51 4.719±0.23 7.171±5.38 12.356±2.12 4.234±0.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BP CIL_0009BP_0002 VISTA 10:42334080-42935172
CIL_0008G4 CIL_0008G4_0002 VISTA 10:42335863-42936982
CIL_0007KA CIL_0007KA_0003 UCNEbase 10:42339928-43024116
CIL_0006OL CIL_0006OL_0002 CGP 10:42761496-42960780

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001889 IGI liver development
GO:0005515 IEA protein binding
GO:0005783 IEA endoplasmic reticulum
GO:0006614 IMP SRP-dependent cotranslational protein targeting to membrane
GO:0006620 IMP posttranslational protein targeting to membrane
GO:0006807 IGI nitrogen compound metabolic process
GO:0008565 IEA protein transporter activity
GO:0010259 IMP multicellular organismal aging
GO:0016020 ISO membrane
GO:0016021 IEA integral component of membrane
GO:0031204 IEA posttranslational protein targeting to membrane, translocation
GO:0044822 IEA poly(A) RNA binding
GO:0072001 IGI renal system development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000251195 CLSPN-001 protein_coding Homo_sapiens 0.0001 55
ENST00000318121 CLSPN-005 protein_coding Homo_sapiens 0.0001 55
ENST00000369002 SEC63-001 protein_coding Homo_sapiens 0 3792
ENST00000373220 CLSPN-003 protein_coding Homo_sapiens 0.0001 55
ENST00000425785 SEC63P1-001 processed_pseudogene Homo_sapiens 0 1515
ENST00000429168 SEC63-007 protein_coding Homo_sapiens 0 811
ENST00000446496 SEC63-010 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000459782 SEC63-004 retained_intron Homo_sapiens 0 797
ENST00000460009 SEC63-002 processed_transcript Homo_sapiens 0 209
ENST00000466419 SEC63-003 retained_intron Homo_sapiens 0 472
ENST00000473746 SEC63-008 retained_intron Homo_sapiens 0 484
ENST00000484803 SEC63-005 retained_intron Homo_sapiens 0 817
ENST00000489455 SEC63-006 retained_intron Homo_sapiens 0 499
ENST00000520551 CLSPN-004 protein_coding Homo_sapiens 0.0001 55

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