C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glial cell line derived neurotrophic factor family receptor alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000129100 Gfra1-004 ENSMUSG00000025089 10090 - 19:58235612-58454592 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000129100
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000129100 0.219±0.12 0.155±0.08 0.937±0.12 4.660±0.00 0.486±0.26 0.322±0.05 0.561±0.23 1.224±0.47 3.285±2.18 1.203±0.00 0.540±0.20 0.373±0.31 0.028±0.01 0.699±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S7 CIL_0006S7_0002 CGP 19:57611034-58455909
CIL_00088K CIL_00088K_0002 VISTA 19:58071922-58673062
CIL_0008H3 CIL_0008H3_0002 VISTA 19:58119231-58720471
CIL_0006FD CIL_0006FD_0003 CGP 19:58235604-58553085

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 TAS receptor activity
GO:0005886 IEA plasma membrane
GO:0007169 TAS transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007399 IMP nervous system development
GO:0009653 TAS anatomical structure morphogenesis
GO:0019898 TAS extrinsic component of membrane
GO:0031225 IEA anchored component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306793 GFRA2-002 nonsense_mediated_decay Homo_sapiens 3e-33 148
ENST00000355422 GFRA1-002 protein_coding Homo_sapiens 0 1897
ENST00000369234 GFRA1-003 protein_coding Homo_sapiens 0 1814
ENST00000369236 GFRA1-001 protein_coding Homo_sapiens 0 1960
ENST00000439649 GFRA1-201 protein_coding Homo_sapiens 0 1960
ENST00000517328 GFRA2-005 protein_coding Homo_sapiens 2e-33 148
ENST00000519195 GFRA2-007 protein_coding Homo_sapiens 0.00000000000001 84
ENST00000520676 GFRA2-008 processed_transcript Homo_sapiens 0.00000000000001 84
ENST00000522071 GFRA2-006 protein_coding Homo_sapiens 7e-34 148
ENST00000524240 GFRA2-001 protein_coding Homo_sapiens 4e-33 148

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