C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glial cell line derived neurotrophic factor family receptor alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169850 Gfra1-201 ENSMUSG00000025089 10090 - 19:58236692-58454466 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169850
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169850 0.346±0.12 0.152±0.10 0.279±0.00 3.708±2.73 0.549±0.18 0.532±0.16 0.743±0.27 0.931±0.44 3.992±3.10 1.755±0.40 0.114±0.00 1.157±0.67 0.038±0.02 0.187±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S7 CIL_0006S7_0002 CGP 19:57611034-58455909
CIL_00088K CIL_00088K_0002 VISTA 19:58071922-58673062
CIL_0008H3 CIL_0008H3_0002 VISTA 19:58119231-58720471
CIL_0006FD CIL_0006FD_0003 CGP 19:58235604-58553085

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004872 TAS receptor activity
GO:0005886 IEA plasma membrane
GO:0007169 TAS transmembrane receptor protein tyrosine kinase signaling pathway
GO:0007399 IMP nervous system development
GO:0009653 TAS anatomical structure morphogenesis
GO:0019898 TAS extrinsic component of membrane
GO:0031225 IEA anchored component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306793 GFRA2-002 nonsense_mediated_decay Homo_sapiens 3e-33 148
ENST00000355422 GFRA1-002 protein_coding Homo_sapiens 0 1886
ENST00000369234 GFRA1-003 protein_coding Homo_sapiens 0 1803
ENST00000369236 GFRA1-001 protein_coding Homo_sapiens 0 1799
ENST00000439649 GFRA1-201 protein_coding Homo_sapiens 0 1799
ENST00000517328 GFRA2-005 protein_coding Homo_sapiens 2e-33 148
ENST00000519195 GFRA2-007 protein_coding Homo_sapiens 0.00000000000001 84
ENST00000520676 GFRA2-008 processed_transcript Homo_sapiens 0.00000000000001 84
ENST00000522071 GFRA2-006 protein_coding Homo_sapiens 7e-34 148
ENST00000524240 GFRA2-001 protein_coding Homo_sapiens 4e-33 148

Loading