C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006SL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000004695-ENSDARG00000002077 CGP 7955 13:31860330-31905553
GeneTranscriptPositionBiotype
ENSDARG00000002077 (mnat1)
menage a trois homolog 1 		ENSDART00000006648 (mnat1-001) 31871873-31905553 protein_coding
ENSDARG00000004695 (six4a)
sine oculis homeobox homolog 4a 		ENSDART00000125987 (six4a-201) 31860330-31870591 protein_coding
ENSDART00000135381 (six4a-001) 31860334-31870925 protein_coding
ENSDART00000143903 (six4a-002) 31860334-31870608 nonsense_mediated_decay

Danio rerio Ensembl (Zv9)

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CIL_0006SL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000100625-ENSG00000020426 CGP 9606 14:60709528-60969953
GeneTranscriptPositionBiotype
ENSG00000100625 (SIX4)
SIX homeobox 4 		ENST00000216513 (SIX4-001) 60709528-60724134 protein_coding
ENST00000554079 (SIX4-002) 60713167-60723165 processed_transcript
ENST00000556952 (SIX4-004) 60719802-60724348 protein_coding
ENSG00000258445 (RP11-307P22.1)
 ENST00000556153 (RP11-307P22.1-001) 60779978-60780595 processed_pseudogene
ENSG00000258485 (SRMP2)
spermidine synthase pseudogene 2 		ENST00000553832 (SRMP2-001) 60919240-60920155 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0006SL_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000034460-ENSMUSG00000021103 CGP 10090 12:73099609-73273988
GeneTranscriptPositionBiotype
ENSMUSG00000021103 (Mnat1)
menage a trois 1 		ENSMUST00000021523 (Mnat1-001) 73123717-73273988 protein_coding
ENSMUST00000187549 (Mnat1-002) 73123717-73233548 protein_coding
ENSMUST00000189644 (Mnat1-003) 73123717-73272851 nonsense_mediated_decay
ENSMUSG00000034460 (Six4)
sine oculis-related homeobox 4 		ENSMUST00000043208 (Six4-001) 73099609-73113425 protein_coding
ENSMUST00000175693 (Six4-002) 73103441-73113456 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006SL_0001ENSDARG00000002077ENSDART00000006648ENSDARG00000004695ENSDART00000125987ENSDART00000135381ENSDART00000143903CIL_0006SL_0002ENSG00000100625ENST00000216513ENST00000554079ENST00000556952ENSG00000258445ENST00000556153ENSG00000258485ENST00000553832CIL_0006SL_0003ENSMUSG00000021103ENSMUST00000021523ENSMUST00000187549ENSMUST00000189644ENSMUSG00000034460ENSMUST00000043208ENSMUST00000175693
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006SL_0001ENSDARG00000002077ENSDART00000006648ENSDARG00000004695ENSDART00000125987ENSDART00000135381ENSDART00000143903CIL_0006SL_0002ENSG00000100625ENST00000216513ENST00000554079ENST00000556952ENSG00000258445ENST00000556153ENSG00000258485ENST00000553832CIL_0006SL_0003ENSMUSG00000021103ENSMUST00000021523ENSMUST00000187549ENSMUST00000189644ENSMUSG00000034460ENSMUST00000043208ENSMUST00000175693
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000002077 ENSDART00000006648 N/A N/A N/A 2.952±1.61 N/A N/A 1.865±0.79 6.030±0.00 0.153±0.00 N/A 1.968±0.00 N/A N/A N/A
ENSDARG00000004695 ENSDART00000125987 N/A N/A N/A 0.056±0.02 N/A N/A 0.034±0.01 0.128±0.00 N/A N/A 9.764±0.00 N/A N/A N/A
ENSDART00000135381 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.931±0.00 N/A N/A N/A
ENSDART00000143903 N/A N/A N/A 0.016±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100625 ENST00000216513 0.252±0.00 0.072±0.00 0.073±0.00 0.185±0.00 0.441±0.00 0.166±0.00 0.016±0.00 0.588±0.00 N/A 0.696±0.00 3.191±0.00 0.589±0.36 0.297±0.08 0.443±0.00
ENST00000554079 N/A N/A N/A 0.120±0.00 1.041±0.00 N/A N/A N/A 0.101±0.00 N/A 0.789±0.00 N/A N/A N/A
ENST00000556952 N/A N/A N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A 0.314±0.00 N/A
ENSG00000258445 ENST00000556153 N/A 0.251±0.00 0.345±0.00 0.160±0.08 0.555±0.00 0.570±0.00 0.108±0.06 0.157±0.06 1.154±0.00 0.384±0.00 0.099±0.00 0.205±0.16 N/A 0.168±0.00
ENSG00000258485 ENST00000553832 0.050±0.00 N/A N/A 0.097±0.06 0.410±0.00 0.745±0.00 0.207±0.03 0.069±0.00 0.140±0.00 0.791±0.00 0.574±0.00 0.519±0.47 N/A 0.093±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021103 ENSMUST00000021523 N/A 0.262±0.00 1.162±0.09 1.075±0.16 N/A N/A N/A N/A 0.821±0.28 N/A 1.330±0.14 2.107±0.60 1.904±1.16 1.899±0.00
ENSMUST00000187549 N/A 0.404±0.13 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189644 6.474±0.86 2.680±0.63 7.860±2.31 9.780±3.84 5.416±1.36 3.174±0.79 4.469±0.21 5.842±0.66 3.781±2.00 5.311±0.94 3.854±0.78 8.420±6.85 17.984±15.86 6.632±4.97
ENSMUSG00000034460 ENSMUST00000043208 0.344±0.22 0.143±0.05 0.379±0.01 0.073±0.00 N/A 0.118±0.04 0.323±0.00 0.248±0.20 0.010±0.00 0.514±0.23 0.596±0.19 0.842±0.05 0.092±0.08 0.029±0.00
ENSMUST00000175693 0.106±0.07 0.103±0.04 N/A 0.044±0.02 0.168±0.00 0.079±0.04 N/A 0.072±0.00 0.007±0.00 0.265±0.04 N/A 0.420±0.19 0.023±0.01 0.031±0.01

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