C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006TP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000162843-ENSG00000174371 CGP 9606 1:241652278-241895148
GeneTranscriptPositionBiotype
ENSG00000054277 (OPN3)
opsin 3 		ENST00000366554 (OPN3-001) 241593124-241640361 protein_coding
ENST00000462265 (OPN3-006) 241590102-241601178 processed_transcript
ENST00000463155 (OPN3-005) 241594212-241677376 processed_transcript
ENST00000469376 (OPN3-002) 241593602-241640340 processed_transcript
ENST00000478849 (OPN3-004) 241594598-241640210 processed_transcript
ENST00000490673 (OPN3-003) 241593602-241640355 processed_transcript
ENSG00000162843 (WDR64)
WD repeat domain 64 		ENST00000366552 (WDR64-201) 241652278-241802133 protein_coding
ENST00000414635 (WDR64-003) 241683580-241801463 protein_coding
ENST00000425826 (WDR64-002) 241749547-241801655 protein_coding
ENST00000437684 (WDR64-202) 241683580-241801467 protein_coding
ENST00000461971 (WDR64-008) 241660528-241683657 processed_transcript
ENST00000472717 (WDR64-004) 241741548-241796298 nonsense_mediated_decay
ENST00000478331 (WDR64-007) 241770455-241787894 retained_intron
ENST00000496914 (WDR64-006) 241660633-241676408 processed_transcript
ENSG00000174371 (EXO1)
exonuclease 1 		ENST00000348581 (EXO1-201) 241848731-241889937 protein_coding
ENST00000366548 (EXO1-001) 241848180-241889939 protein_coding
ENST00000423131 (EXO1-004) 241848225-241858589 protein_coding
ENST00000437497 (EXO1-005) 241848950-241858589 protein_coding
ENST00000450748 (EXO1-003) 241848951-241853481 protein_coding
ENST00000469419 (EXO1-006) 241850492-241860704 processed_transcript
ENST00000493702 (EXO1-007) 241848983-241858718 processed_transcript
ENST00000518483 (EXO1-002) 241848831-241889746 protein_coding
ENST00000518741 (EXO1-010) 241885357-241895148 processed_transcript
ENST00000519225 (EXO1-008) 241847967-241850460 protein_coding
ENST00000521202 (EXO1-011) 241879040-241889594 protein_coding
ENST00000523590 (EXO1-009) 241848251-241853481 protein_coding
ENSG00000229022 (RP11-553N16.1)
 ENST00000414898 (RP11-553N16.1-001) 241831935-241832787 processed_pseudogene
CIL_0006TP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026523-ENSMUSG00000039748 CGP 10090 1:175698593-175911396
GeneTranscriptPositionBiotype
ENSMUSG00000026523 (Wdr64)
WD repeat domain 64 		ENSMUST00000094288 (Wdr64-201) 175698593-175815734 protein_coding
ENSMUST00000171939 (Wdr64-202) 175698593-175815734 protein_coding
ENSMUSG00000039748 (Exo1)
exonuclease 1 		ENSMUST00000039725 (Exo1-201) 175880778-175911396 protein_coding
ENSMUSG00000094820 (Gm23805)
predicted gene, 23805 		ENSMUST00000180129 (Gm23805-201) 175904545-175904651 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006TP_0001ENSG00000054277ENST00000366554ENST00000462265ENST00000463155ENST00000469376ENST00000478849ENST00000490673ENSG00000162843ENST00000366552ENST00000414635ENST00000425826ENST00000437684ENST00000461971ENST00000472717ENST00000478331ENST00000496914ENSG00000174371ENST00000348581ENST00000366548ENST00000423131ENST00000437497ENST00000450748ENST00000469419ENST00000493702ENST00000518483ENST00000518741ENST00000519225ENST00000521202ENST00000523590ENSG00000229022ENST00000414898CIL_0006TP_0002ENSMUSG00000026523ENSMUST00000094288ENSMUST00000171939ENSMUSG00000039748ENSMUST00000039725ENSMUSG00000094820ENSMUST00000180129
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006TP_0001ENSG00000054277ENST00000366554ENST00000462265ENST00000463155ENST00000469376ENST00000478849ENST00000490673ENSG00000162843ENST00000366552ENST00000414635ENST00000425826ENST00000437684ENST00000461971ENST00000472717ENST00000478331ENST00000496914ENSG00000174371ENST00000348581ENST00000366548ENST00000423131ENST00000437497ENST00000469419ENST00000518483ENST00000518741ENST00000519225ENST00000521202ENSG00000229022ENST00000414898CIL_0006TP_0002ENSMUSG00000026523ENSMUST00000094288ENSMUST00000171939ENSMUSG00000039748ENSMUST00000039725ENSMUSG00000094820ENSMUST00000180129
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000054277 ENST00000366554 1.005±0.00 1.505±0.00 N/A 3.780±0.18 1.388±0.00 1.093±0.11 0.477±0.35 4.431±1.02 3.583±0.00 2.368±0.39 N/A 1.713±0.97 13.476±2.96 1.517±0.62
ENST00000462265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.350±0.00
ENST00000463155 N/A N/A N/A N/A N/A 1.257±0.00 0.395±0.00 N/A N/A N/A 1.557±0.00 N/A N/A N/A
ENST00000469376 N/A N/A N/A N/A 1.521±0.00 0.861±0.00 0.595±0.00 N/A N/A 5.232±0.00 0.415±0.00 N/A 8.992±0.47 N/A
ENST00000478849 N/A N/A N/A N/A N/A N/A N/A N/A 1.096±0.00 N/A N/A N/A N/A N/A
ENST00000490673 3.052±0.00 2.536±0.00 N/A 6.128±0.00 1.147±0.00 1.325±0.14 0.639±0.51 8.826±0.00 2.927±2.45 1.837±0.12 N/A 2.667±1.50 15.147±1.05 2.996±1.20
ENSG00000162843 ENST00000366552 N/A N/A 0.056±0.00 0.034±0.00 N/A N/A N/A 0.017±0.00 N/A N/A N/A 0.015±0.00 0.037±0.00 N/A
ENST00000414635 N/A N/A N/A N/A 0.041±0.00 N/A N/A N/A N/A N/A N/A 0.029±0.00 0.121±0.07 1.096±0.63
ENST00000425826 0.005±0.00 0.112±0.00 N/A N/A N/A N/A 0.005±0.00 N/A N/A N/A N/A 0.058±0.00 0.115±0.10 1.051±0.74
ENST00000437684 N/A N/A N/A N/A 0.042±0.00 N/A N/A N/A N/A N/A N/A 0.007±0.00 N/A N/A
ENST00000461971 N/A N/A N/A N/A 0.124±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 1.360±0.00
ENST00000472717 N/A N/A N/A 0.021±0.00 0.028±0.00 0.063±0.00 N/A N/A N/A 0.189±0.00 N/A N/A N/A 1.063±0.00
ENST00000478331 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.107±0.00 N/A
ENST00000496914 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.058±0.00 N/A N/A
ENSG00000174371 ENST00000348581 0.029±0.00 N/A N/A N/A N/A 0.269±0.00 0.023±0.00 0.074±0.00 N/A N/A N/A 0.928±0.00 N/A N/A
ENST00000366548 N/A 0.031±0.00 N/A 0.020±0.00 0.401±0.00 N/A N/A N/A N/A N/A N/A 0.450±0.15 0.788±0.55 0.648±0.00
ENST00000423131 N/A N/A N/A N/A N/A 1.219±0.00 N/A N/A N/A 0.797±0.00 N/A 1.642±0.00 N/A N/A
ENST00000437497 N/A N/A N/A N/A N/A N/A 0.109±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000450748 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469419 N/A 0.246±0.00 0.421±0.00 0.061±0.00 0.078±0.00 N/A N/A N/A 0.392±0.00 N/A N/A N/A N/A N/A
ENST00000493702 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518483 N/A 0.124±0.00 N/A 0.051±0.00 0.281±0.21 0.280±0.17 0.043±0.00 0.191±0.00 0.004±0.00 0.114±0.00 N/A 0.232±0.18 0.370±0.08 1.087±0.53
ENST00000518741 0.170±0.00 0.491±0.00 N/A N/A 0.271±0.00 N/A N/A 0.209±0.00 0.106±0.00 0.237±0.00 N/A N/A N/A N/A
ENST00000519225 N/A N/A 0.826±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521202 0.109±0.00 N/A N/A N/A N/A 0.151±0.00 0.091±0.00 N/A 0.018±0.00 N/A N/A 0.457±0.00 N/A 2.647±0.00
ENST00000523590 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229022 ENST00000414898 0.143±0.00 0.136±0.00 N/A 0.103±0.00 0.237±0.00 0.094±0.02 0.074±0.04 0.102±0.00 0.075±0.00 0.065±0.00 0.103±0.00 0.107±0.00 0.025±0.00 0.105±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026523 ENSMUST00000094288 N/A N/A 0.001±0.00 0.006±0.00 N/A N/A 0.006±0.00 0.002±0.00 0.011±0.00 N/A 0.006±0.00 N/A 0.016±0.01 25.365±10.69
ENSMUST00000171939 0.009±0.00 N/A 0.001±0.00 0.011±0.00 N/A N/A 0.022±0.02 0.020±0.02 N/A N/A 0.006±0.00 N/A 0.003±0.00 N/A
ENSMUSG00000039748 ENSMUST00000039725 0.306±0.28 0.074±0.05 0.041±0.02 0.359±0.17 0.068±0.04 0.321±0.08 0.009±0.00 0.022±0.01 1.162±1.34 0.064±0.02 0.014±0.01 0.858±0.14 1.830±1.64 0.695±0.17
ENSMUSG00000094820 ENSMUST00000180129 N/A N/A N/A 26.274±0.00 N/A N/A N/A N/A 49.821±0.00 N/A N/A N/A N/A N/A

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