C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007LP_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
LMO1 UCNEbase 9606 11:8177826-8296591
GeneTranscriptPositionBiotype
ENSG00000166407 (LMO1)
LIM domain only 1 (rhombotin 1) 		ENST00000335790 (LMO1-001) 8224304-8263858 protein_coding
ENST00000428101 (LMO1-003) 8224314-8268716 protein_coding
ENST00000524379 (LMO1-002) 8224449-8263388 retained_intron
ENST00000534484 (LMO1-004) 8224479-8263858 protein_coding
ENSG00000246820 (RP11-379P15.1)
 ENST00000499752 (RP11-379P15.1-001) 8169167-8178903 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0007LP_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
LMO1 UCNEbase 10090 7:109090435-109203250
GeneTranscriptPositionBiotype
ENSMUSG00000036111 (Lmo1)
LIM domain only 1 		ENSMUST00000036992 (Lmo1-201) 109138572-109170308 protein_coding

Mus musculus Ensembl (GRCm38)

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CIL_0007LP_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
LMO1 UCNEbase 7955 7:29481245-29502176
GeneTranscriptPositionBiotype
ENSDARG00000034504 (lmo1)
LIM domain only 1 		ENSDART00000044208 (lmo1-201) 29445656-29484563 protein_coding
ENSDART00000139655 (lmo1-001) 29461619-29484581 protein_coding

Danio rerio Ensembl (Zv9)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007LP_0001ENSG00000166407ENST00000335790ENST00000428101ENST00000524379ENST00000534484ENSG00000246820ENST00000499752CIL_0007LP_0002ENSMUSG00000036111ENSMUST00000036992CIL_0007LP_0003ENSDARG00000034504ENSDART00000044208ENSDART00000139655
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007LP_0001ENSG00000166407ENST00000335790ENST00000428101ENST00000524379ENST00000534484ENSG00000246820ENST00000499752CIL_0007LP_0002ENSMUSG00000036111ENSMUST00000036992CIL_0007LP_0003ENSDARG00000034504ENSDART00000044208ENSDART00000139655
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000166407 ENST00000335790 N/A N/A 0.120±0.00 0.170±0.10 N/A N/A N/A 0.094±0.00 0.062±0.00 N/A 1.685±0.00 N/A 0.119±0.00 0.170±0.00
ENST00000428101 N/A N/A N/A 0.946±0.00 0.153±0.00 N/A 0.297±0.08 0.178±0.00 N/A N/A 1.106±0.80 N/A 0.216±0.00 0.960±0.06
ENST00000524379 N/A N/A N/A N/A 0.114±0.00 0.506±0.44 N/A N/A N/A N/A N/A N/A 0.201±0.00 0.333±0.00
ENST00000534484 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.300±0.00 0.232±0.00
ENSG00000246820 ENST00000499752 N/A N/A N/A 0.015±0.00 0.054±0.00 N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A 0.184±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000036111 ENSMUST00000036992 4.343±2.82 3.363±0.53 52.668±2.65 22.366±15.55 2.299±0.77 0.348±0.15 1.454±0.92 0.901±0.23 0.110±0.05 0.414±0.05 0.783±0.87 1.761±0.70 0.255±0.21 1.360±0.67
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000034504 ENSDART00000044208 N/A N/A N/A 24.716±14.67 N/A N/A 0.163±0.01 0.411±0.38 0.032±0.00 N/A 1.845±0.00 N/A N/A N/A
ENSDART00000139655 N/A N/A N/A 9.859±0.00 N/A N/A 0.199±0.00 N/A N/A N/A N/A N/A N/A N/A

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