| Source ID |
Type |
Tax ID |
Position |
| WWOX |
UCNEbase |
7955 |
18:29655235-29723783  |
| Gene | Transcript | Position | Biotype |
|---|
Notice (8): Undefined index: CIL_0007LR_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007LR_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LR_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LR_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000186153' => 'WW domain containing oxidoreductase',
'ENSG00000222244' => 'RNA, 5S ribosomal pseudogene 431',
'ENSG00000243101' => 'ribosomal protein S3 pseudogene 7',
'ENSG00000260014' => 'LSM3 pseudogene 5',
'ENSG00000260479' => null,
'ENSG00000260511' => null,
'ENSG00000260694' => null,
'ENSG00000260733' => null,
'ENSG00000260816' => null,
'ENSG00000260969' => null,
'ENSG00000261537' => null,
'ENSG00000261722' => null,
'ENSG00000261837' => null,
'ENSG00000277954' => null,
'ENSG00000279129' => null,
'ENSG00000279732' => null,
'ENSG00000279887' => null,
'ENSG00000280115' => null,
'ENSG00000280190' => null,
'ENSG00000280274' => null,
'ENSMUSG00000004637' => 'WW domain-containing oxidoreductase',
'ENSMUSG00000088428' => 'predicted gene, 22556',
'ENSMUSG00000089723' => 'predicted gene 16117',
'ENSMUSG00000089797' => 'predicted gene 16118',
'ENSMUSG00000090217' => 'predicted gene 16116',
'ENSDARG00000007614' => 'WW domain containing oxidoreductase',
'ENSDARG00000082003' => '5S ribosomal RNA'
),
'gene_name_arr' => array(
'ENSG00000186153' => 'WWOX',
'ENSG00000222244' => 'RNA5SP431',
'ENSG00000243101' => 'RPS3P7',
'ENSG00000260014' => 'LSM3P5',
'ENSG00000260479' => 'RP11-556H2.3',
'ENSG00000260511' => 'RP11-556H2.2',
'ENSG00000260694' => 'RP11-556H2.4',
'ENSG00000260733' => 'RP11-264L1.4',
'ENSG00000260816' => 'RP11-319G9.3',
'ENSG00000260969' => 'RP11-190D6.2',
'ENSG00000261537' => 'RP11-319G9.5',
'ENSG00000261722' => 'RP11-679B19.2',
'ENSG00000261837' => 'RP11-264L1.3',
'ENSG00000277954' => 'RP11-679B19.1',
'ENSG00000279129' => 'RP11-264L1.2',
'ENSG00000279732' => 'RP11-319G9.4',
'ENSG00000279887' => 'RP11-264L1.1',
'ENSG00000280115' => 'RP11-133M8.3',
'ENSG00000280190' => 'RP11-319G9.1',
'ENSG00000280274' => 'RP11-556H2.1',
'ENSMUSG00000004637' => 'Wwox',
'ENSMUSG00000088428' => 'Gm22556',
'ENSMUSG00000089723' => 'Gm16117',
'ENSMUSG00000089797' => 'Gm16118',
'ENSMUSG00000090217' => 'Gm16116',
'ENSDARG00000007614' => 'wwox',
'ENSDARG00000082003' => '5S_rRNA'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 36 => 'Bladder',
(int) 53 => 'Brain',
(int) 77 => 'Breast',
(int) 102 => 'Colon',
(int) 126 => 'Heart',
(int) 153 => 'Kidney',
(int) 175 => 'Liver',
(int) 203 => 'Lung',
(int) 222 => 'Muscle',
(int) 241 => 'Ovary',
(int) 265 => 'Placenta',
(int) 284 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 54,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000355860' => array(
'start' => '78099679',
'end' => '78278696',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-001'
),
'ENST00000402655' => array(
'start' => '78099654',
'end' => '79212667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-003'
),
'ENST00000406884' => array(
'start' => '78099654',
'end' => '79212667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-004'
),
'ENST00000408984' => array(
'start' => '78099694',
'end' => '78780449',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-006'
),
'ENST00000539474' => array(
'start' => '78099654',
'end' => '79212667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-016'
),
'ENST00000561846' => array(
'start' => '78099735',
'end' => '78281049',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-015'
),
'ENST00000562214' => array(
'start' => '78099656',
'end' => '78119076',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-008'
),
'ENST00000562639' => array(
'start' => '78130049',
'end' => '78432603',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-013'
),
'ENST00000563358' => array(
'start' => '78099786',
'end' => '78278703',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-011'
),
'ENST00000565562' => array(
'start' => '78099734',
'end' => '78111992',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-010'
),
'ENST00000565791' => array(
'start' => '78145917',
'end' => '78270586',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-012'
),
'ENST00000566103' => array(
'start' => '79196359',
'end' => '79212300',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-014'
),
'ENST00000566662' => array(
'start' => '78099656',
'end' => '78424956',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WWOX-009'
),
'ENST00000566780' => array(
'start' => '78099413',
'end' => '79212667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-005'
),
'ENST00000569332' => array(
'start' => '78099626',
'end' => '79212319',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WWOX-002'
),
'ENST00000569818' => array(
'start' => '78099675',
'end' => '78100199',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-007'
),
'ENST00000620008' => array(
'start' => '78424871',
'end' => '78432752',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-201'
),
'ENST00000410312' => array(
'start' => '79264454',
'end' => '79264573',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP431-201'
),
'ENST00000488662' => array(
'start' => '78825281',
'end' => '78826006',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS3P7-001'
),
'ENST00000566307' => array(
'start' => '78355529',
'end' => '78355834',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'LSM3P5-001'
),
'ENST00000563230' => array(
'start' => '79090050',
'end' => '79101754',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-556H2.3-001'
),
'ENST00000562685' => array(
'start' => '79105957',
'end' => '79110882',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-556H2.2-001'
),
'ENST00000567386' => array(
'start' => '79077376',
'end' => '79078234',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-556H2.4-001'
),
'ENST00000563408' => array(
'start' => '78495926',
'end' => '78506568',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-264L1.4-001'
),
'ENST00000568885' => array(
'start' => '78895361',
'end' => '78899644',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-319G9.3-001'
),
'ENST00000567099' => array(
'start' => '78237362',
'end' => '78241218',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-190D6.2-001'
),
'ENST00000561938' => array(
'start' => '78994345',
'end' => '79004730',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-319G9.5-001'
),
'ENST00000569677' => array(
'start' => '79212711',
'end' => '79229453',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-679B19.2-001'
),
'ENST00000568764' => array(
'start' => '78534374',
'end' => '78535648',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-264L1.3-001'
),
'ENST00000622621' => array(
'start' => '79202624',
'end' => '79206739',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-679B19.1-001'
),
'ENST00000624947' => array(
'start' => '78550739',
'end' => '78553296',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-264L1.2-001'
),
'ENST00000625162' => array(
'start' => '78550739',
'end' => '78553290',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-264L1.2-201'
),
'ENST00000625055' => array(
'start' => '78981722',
'end' => '78981843',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-319G9.4-001'
),
'ENST00000623121' => array(
'start' => '78525189',
'end' => '78526535',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-264L1.1-001'
),
'ENST00000625152' => array(
'start' => '78872739',
'end' => '78873505',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-133M8.3-001'
),
'ENST00000624371' => array(
'start' => '78890231',
'end' => '78892302',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-319G9.1-001'
),
'ENST00000625119' => array(
'start' => '79016136',
'end' => '79017429',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-556H2.1-001'
),
'ENSMUST00000004756' => array(
'start' => '114439655',
'end' => '115352708',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wwox-001'
),
'ENSMUST00000109107' => array(
'start' => '114439702',
'end' => '114474529',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wwox-002'
),
'ENSMUST00000109108' => array(
'start' => '114439695',
'end' => '114875238',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wwox-004'
),
'ENSMUST00000159870' => array(
'start' => '114712167',
'end' => '115019702',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-007'
),
'ENSMUST00000160005' => array(
'start' => '114439702',
'end' => '114453818',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-005'
),
'ENSMUST00000160205' => array(
'start' => '114608436',
'end' => '114706324',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-008'
),
'ENSMUST00000160862' => array(
'start' => '114439695',
'end' => '114718679',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wwox-003'
),
'ENSMUST00000161753' => array(
'start' => '114448210',
'end' => '114514288',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-009'
),
'ENSMUST00000162052' => array(
'start' => '114712167',
'end' => '115352143',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-006'
),
'ENSMUST00000157803' => array(
'start' => '115052814',
'end' => '115052913',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'Gm22556-201'
),
'ENSMUST00000160544' => array(
'start' => '114639546',
'end' => '114642114',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm16117-001'
),
'ENSMUST00000161914' => array(
'start' => '114698439',
'end' => '114708006',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm16118-001'
),
'ENSMUST00000159472' => array(
'start' => '114591303',
'end' => '114594900',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm16116-001'
),
'ENSDART00000020806' => array(
'start' => '37922180',
'end' => '38097975',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wwox-201'
),
'ENSDART00000150173' => array(
'start' => '37987960',
'end' => '38002450',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'wwox-002'
),
'ENSDART00000150178' => array(
'start' => '37993967',
'end' => '38098358',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wwox-001'
),
'ENSDART00000118097' => array(
'start' => '37871532',
'end' => '37871654',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.167-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007LR_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LR_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LR_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007LR_0001' => array(
'genes_in_region' => array(
'ENSG00000186153' => array(
[maximum depth reached]
),
'ENSG00000243101' => array(
[maximum depth reached]
),
'ENSG00000260014' => array(
[maximum depth reached]
),
'ENSG00000260479' => array(
[maximum depth reached]
),
'ENSG00000260511' => array(
[maximum depth reached]
),
'ENSG00000260733' => array(
[maximum depth reached]
),
'ENSG00000260816' => array(
[maximum depth reached]
),
'ENSG00000260969' => array(
[maximum depth reached]
),
'ENSG00000261537' => array(
[maximum depth reached]
),
'ENSG00000261722' => array(
[maximum depth reached]
),
'ENSG00000261837' => array(
[maximum depth reached]
),
'ENSG00000277954' => array(
[maximum depth reached]
),
'ENSG00000279129' => array(
[maximum depth reached]
),
'ENSG00000279732' => array(
[maximum depth reached]
),
'ENSG00000279887' => array(
[maximum depth reached]
),
'ENSG00000280115' => array(
[maximum depth reached]
),
'ENSG00000280190' => array(
[maximum depth reached]
),
'ENSG00000280274' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Liver',
(int) 3 => 'Lung',
(int) 4 => 'Ovary',
(int) 5 => 'Breast',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Bladder',
(int) 25 => 'Liver',
(int) 26 => 'Placenta',
(int) 27 => 'Adrenal',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Heart',
(int) 34 => 'Liver',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Testis',
(int) 38 => 'Adipose',
(int) 39 => 'Adrenal',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Muscle',
(int) 44 => 'Testis',
(int) 45 => 'Colon',
(int) 46 => 'Liver',
(int) 47 => 'Adipose',
(int) 48 => 'Brain',
(int) 49 => 'Colon',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Lung',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Adipose',
(int) 57 => 'Adrenal',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Kidney',
(int) 62 => 'Lung',
(int) 63 => 'Testis',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Liver',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Heart',
(int) 77 => 'Liver',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Testis',
(int) 81 => 'Bladder',
(int) 82 => 'Breast',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Heart',
(int) 86 => 'Liver',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Heart',
(int) 90 => 'Testis',
(int) 91 => 'Adrenal',
(int) 92 => 'Breast',
(int) 93 => 'Kidney',
(int) 94 => 'Liver',
(int) 95 => 'Testis',
(int) 96 => 'Adipose',
(int) 97 => 'Adrenal',
(int) 98 => 'Bladder',
(int) 99 => 'Brain',
(int) 100 => 'Breast',
(int) 101 => 'Colon',
(int) 102 => 'Heart',
(int) 103 => 'Kidney',
(int) 104 => 'Liver',
(int) 105 => 'Lung',
(int) 106 => 'Muscle',
(int) 107 => 'Ovary',
(int) 108 => 'Placenta',
(int) 109 => 'Testis',
(int) 110 => 'Bladder',
(int) 111 => 'Kidney',
(int) 112 => 'Liver',
(int) 113 => 'Ovary',
(int) 114 => 'Testis',
(int) 115 => 'Adrenal',
(int) 116 => 'Bladder',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Colon',
(int) 120 => 'Heart',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Adipose',
(int) 124 => 'Adrenal',
(int) 125 => 'Brain',
(int) 126 => 'Breast',
(int) 127 => 'Colon',
(int) 128 => 'Heart',
(int) 129 => 'Liver',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Brain',
(int) 134 => 'Breast',
(int) 135 => 'Colon',
(int) 136 => 'Heart',
(int) 137 => 'Lung',
(int) 138 => 'Testis',
(int) 139 => 'Adipose',
(int) 140 => 'Adrenal',
(int) 141 => 'Bladder',
(int) 142 => 'Brain',
(int) 143 => 'Breast',
(int) 144 => 'Colon',
(int) 145 => 'Heart',
(int) 146 => 'Kidney',
(int) 147 => 'Liver',
(int) 148 => 'Lung',
(int) 149 => 'Muscle',
(int) 150 => 'Ovary',
(int) 151 => 'Placenta',
(int) 152 => 'Testis',
(int) 153 => 'Bladder',
(int) 154 => 'Breast',
(int) 155 => 'Colon',
(int) 156 => 'Heart',
(int) 157 => 'Kidney',
(int) 158 => 'Liver',
(int) 159 => 'Lung',
(int) 160 => 'Muscle',
(int) 161 => 'Ovary',
(int) 162 => 'Placenta',
(int) 163 => 'Testis',
(int) 164 => 'Adipose',
(int) 165 => 'Adrenal',
(int) 166 => 'Bladder',
(int) 167 => 'Brain',
(int) 168 => 'Breast',
(int) 169 => 'Colon',
(int) 170 => 'Heart',
(int) 171 => 'Kidney',
(int) 172 => 'Liver',
(int) 173 => 'Lung',
(int) 174 => 'Muscle',
(int) 175 => 'Ovary',
(int) 176 => 'Placenta',
(int) 177 => 'Testis',
(int) 178 => 'Testis',
(int) 179 => 'Adipose',
(int) 180 => 'Adrenal',
(int) 181 => 'Bladder',
(int) 182 => 'Brain',
(int) 183 => 'Breast',
(int) 184 => 'Colon',
(int) 185 => 'Heart',
(int) 186 => 'Kidney',
(int) 187 => 'Liver',
(int) 188 => 'Lung',
(int) 189 => 'Muscle',
(int) 190 => 'Ovary',
(int) 191 => 'Testis',
(int) 192 => 'Adrenal',
(int) 193 => 'Bladder',
(int) 194 => 'Brain',
(int) 195 => 'Colon',
(int) 196 => 'Heart',
(int) 197 => 'Lung',
(int) 198 => 'Muscle',
(int) 199 => 'Adrenal',
(int) 200 => 'Bladder',
(int) 201 => 'Brain',
(int) 202 => 'Breast',
(int) 203 => 'Colon',
(int) 204 => 'Heart',
(int) 205 => 'Kidney',
(int) 206 => 'Liver',
(int) 207 => 'Lung',
(int) 208 => 'Muscle',
(int) 209 => 'Ovary',
(int) 210 => 'Testis',
(int) 211 => 'Adipose',
(int) 212 => 'Bladder',
(int) 213 => 'Brain',
(int) 214 => 'Breast',
(int) 215 => 'Colon',
(int) 216 => 'Heart',
(int) 217 => 'Kidney',
(int) 218 => 'Liver',
(int) 219 => 'Lung',
(int) 220 => 'Muscle',
(int) 221 => 'Ovary',
(int) 222 => 'Placenta',
(int) 223 => 'Testis'
)
),
'CIL_0007LR_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000004637' => array(
[maximum depth reached]
),
'ENSMUSG00000089723' => array(
[maximum depth reached]
),
'ENSMUSG00000089797' => array(
[maximum depth reached]
),
'ENSMUSG00000090217' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Adipose',
(int) 21 => 'Bladder',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Liver',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Adipose',
(int) 33 => 'Breast',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Ovary',
(int) 39 => 'Adrenal',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Kidney',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Bladder',
(int) 49 => 'Muscle',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Bladder',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Testis'
)
),
'CIL_0007LR_0004' => array(
'genes_in_region' => array(
'ENSDARG00000007614' => array(
[maximum depth reached]
),
'ENSDARG00000082003' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Heart',
(int) 6 => 'Liver',
(int) 7 => 'Brain',
(int) 8 => 'Heart',
(int) 9 => 'Kidney',
(int) 10 => 'Liver',
(int) 11 => 'Muscle',
(int) 12 => 'Brain'
)
)
)
$gene_desc_arr = array(
'ENSG00000186153' => 'WW domain containing oxidoreductase',
'ENSG00000222244' => 'RNA, 5S ribosomal pseudogene 431',
'ENSG00000243101' => 'ribosomal protein S3 pseudogene 7',
'ENSG00000260014' => 'LSM3 pseudogene 5',
'ENSG00000260479' => null,
'ENSG00000260511' => null,
'ENSG00000260694' => null,
'ENSG00000260733' => null,
'ENSG00000260816' => null,
'ENSG00000260969' => null,
'ENSG00000261537' => null,
'ENSG00000261722' => null,
'ENSG00000261837' => null,
'ENSG00000277954' => null,
'ENSG00000279129' => null,
'ENSG00000279732' => null,
'ENSG00000279887' => null,
'ENSG00000280115' => null,
'ENSG00000280190' => null,
'ENSG00000280274' => null,
'ENSMUSG00000004637' => 'WW domain-containing oxidoreductase',
'ENSMUSG00000088428' => 'predicted gene, 22556',
'ENSMUSG00000089723' => 'predicted gene 16117',
'ENSMUSG00000089797' => 'predicted gene 16118',
'ENSMUSG00000090217' => 'predicted gene 16116',
'ENSDARG00000007614' => 'WW domain containing oxidoreductase',
'ENSDARG00000082003' => '5S ribosomal RNA'
)
$gene_name_arr = array(
'ENSG00000186153' => 'WWOX',
'ENSG00000222244' => 'RNA5SP431',
'ENSG00000243101' => 'RPS3P7',
'ENSG00000260014' => 'LSM3P5',
'ENSG00000260479' => 'RP11-556H2.3',
'ENSG00000260511' => 'RP11-556H2.2',
'ENSG00000260694' => 'RP11-556H2.4',
'ENSG00000260733' => 'RP11-264L1.4',
'ENSG00000260816' => 'RP11-319G9.3',
'ENSG00000260969' => 'RP11-190D6.2',
'ENSG00000261537' => 'RP11-319G9.5',
'ENSG00000261722' => 'RP11-679B19.2',
'ENSG00000261837' => 'RP11-264L1.3',
'ENSG00000277954' => 'RP11-679B19.1',
'ENSG00000279129' => 'RP11-264L1.2',
'ENSG00000279732' => 'RP11-319G9.4',
'ENSG00000279887' => 'RP11-264L1.1',
'ENSG00000280115' => 'RP11-133M8.3',
'ENSG00000280190' => 'RP11-319G9.1',
'ENSG00000280274' => 'RP11-556H2.1',
'ENSMUSG00000004637' => 'Wwox',
'ENSMUSG00000088428' => 'Gm22556',
'ENSMUSG00000089723' => 'Gm16117',
'ENSMUSG00000089797' => 'Gm16118',
'ENSMUSG00000090217' => 'Gm16116',
'ENSDARG00000007614' => 'wwox',
'ENSDARG00000082003' => '5S_rRNA'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LR_0001',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '78176540',
'seq_end' => '79348472',
'region_length' => '1171932',
'region_type' => 'UCNEbase',
'el_id' => 'WWOX'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LR_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '114499853',
'seq_end' => '115474177',
'region_length' => '974324',
'region_type' => 'UCNEbase',
'el_id' => 'WWOX'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LR_0003',
'tax_id' => '7955',
'chromosome' => '18',
'seq_start' => '29655235',
'seq_end' => '29723783',
'region_length' => '68548',
'region_type' => 'UCNEbase',
'el_id' => 'WWOX'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LR_0004',
'tax_id' => '7955',
'chromosome' => '25',
'seq_start' => '37835713',
'seq_end' => '38070923',
'region_length' => '235210',
'region_type' => 'UCNEbase',
'el_id' => 'WWOX'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 36 => 'Bladder',
(int) 53 => 'Brain',
(int) 77 => 'Breast',
(int) 102 => 'Colon',
(int) 126 => 'Heart',
(int) 153 => 'Kidney',
(int) 175 => 'Liver',
(int) 203 => 'Lung',
(int) 222 => 'Muscle',
(int) 241 => 'Ovary',
(int) 265 => 'Placenta',
(int) 284 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 54
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000355860' => array(
'start' => '78099679',
'end' => '78278696',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-001'
),
'ENST00000402655' => array(
'start' => '78099654',
'end' => '79212667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-003'
),
'ENST00000406884' => array(
'start' => '78099654',
'end' => '79212667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-004'
),
'ENST00000408984' => array(
'start' => '78099694',
'end' => '78780449',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-006'
),
'ENST00000539474' => array(
'start' => '78099654',
'end' => '79212667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-016'
),
'ENST00000561846' => array(
'start' => '78099735',
'end' => '78281049',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-015'
),
'ENST00000562214' => array(
'start' => '78099656',
'end' => '78119076',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-008'
),
'ENST00000562639' => array(
'start' => '78130049',
'end' => '78432603',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-013'
),
'ENST00000563358' => array(
'start' => '78099786',
'end' => '78278703',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-011'
),
'ENST00000565562' => array(
'start' => '78099734',
'end' => '78111992',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-010'
),
'ENST00000565791' => array(
'start' => '78145917',
'end' => '78270586',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-012'
),
'ENST00000566103' => array(
'start' => '79196359',
'end' => '79212300',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-014'
),
'ENST00000566662' => array(
'start' => '78099656',
'end' => '78424956',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WWOX-009'
),
'ENST00000566780' => array(
'start' => '78099413',
'end' => '79212667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-005'
),
'ENST00000569332' => array(
'start' => '78099626',
'end' => '79212319',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WWOX-002'
),
'ENST00000569818' => array(
'start' => '78099675',
'end' => '78100199',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-007'
),
'ENST00000620008' => array(
'start' => '78424871',
'end' => '78432752',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-201'
),
'ENST00000410312' => array(
'start' => '79264454',
'end' => '79264573',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP431-201'
),
'ENST00000488662' => array(
'start' => '78825281',
'end' => '78826006',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS3P7-001'
),
'ENST00000566307' => array(
'start' => '78355529',
'end' => '78355834',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'LSM3P5-001'
),
'ENST00000563230' => array(
'start' => '79090050',
'end' => '79101754',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-556H2.3-001'
),
'ENST00000562685' => array(
'start' => '79105957',
'end' => '79110882',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-556H2.2-001'
),
'ENST00000567386' => array(
'start' => '79077376',
'end' => '79078234',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-556H2.4-001'
),
'ENST00000563408' => array(
'start' => '78495926',
'end' => '78506568',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-264L1.4-001'
),
'ENST00000568885' => array(
'start' => '78895361',
'end' => '78899644',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-319G9.3-001'
),
'ENST00000567099' => array(
'start' => '78237362',
'end' => '78241218',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-190D6.2-001'
),
'ENST00000561938' => array(
'start' => '78994345',
'end' => '79004730',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-319G9.5-001'
),
'ENST00000569677' => array(
'start' => '79212711',
'end' => '79229453',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-679B19.2-001'
),
'ENST00000568764' => array(
'start' => '78534374',
'end' => '78535648',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-264L1.3-001'
),
'ENST00000622621' => array(
'start' => '79202624',
'end' => '79206739',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-679B19.1-001'
),
'ENST00000624947' => array(
'start' => '78550739',
'end' => '78553296',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-264L1.2-001'
),
'ENST00000625162' => array(
'start' => '78550739',
'end' => '78553290',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-264L1.2-201'
),
'ENST00000625055' => array(
'start' => '78981722',
'end' => '78981843',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-319G9.4-001'
),
'ENST00000623121' => array(
'start' => '78525189',
'end' => '78526535',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-264L1.1-001'
),
'ENST00000625152' => array(
'start' => '78872739',
'end' => '78873505',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-133M8.3-001'
),
'ENST00000624371' => array(
'start' => '78890231',
'end' => '78892302',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-319G9.1-001'
),
'ENST00000625119' => array(
'start' => '79016136',
'end' => '79017429',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-556H2.1-001'
),
'ENSMUST00000004756' => array(
'start' => '114439655',
'end' => '115352708',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wwox-001'
),
'ENSMUST00000109107' => array(
'start' => '114439702',
'end' => '114474529',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wwox-002'
),
'ENSMUST00000109108' => array(
'start' => '114439695',
'end' => '114875238',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wwox-004'
),
'ENSMUST00000159870' => array(
'start' => '114712167',
'end' => '115019702',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-007'
),
'ENSMUST00000160005' => array(
'start' => '114439702',
'end' => '114453818',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-005'
),
'ENSMUST00000160205' => array(
'start' => '114608436',
'end' => '114706324',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-008'
),
'ENSMUST00000160862' => array(
'start' => '114439695',
'end' => '114718679',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wwox-003'
),
'ENSMUST00000161753' => array(
'start' => '114448210',
'end' => '114514288',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-009'
),
'ENSMUST00000162052' => array(
'start' => '114712167',
'end' => '115352143',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-006'
),
'ENSMUST00000157803' => array(
'start' => '115052814',
'end' => '115052913',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'Gm22556-201'
),
'ENSMUST00000160544' => array(
'start' => '114639546',
'end' => '114642114',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm16117-001'
),
'ENSMUST00000161914' => array(
'start' => '114698439',
'end' => '114708006',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm16118-001'
),
'ENSMUST00000159472' => array(
'start' => '114591303',
'end' => '114594900',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm16116-001'
),
'ENSDART00000020806' => array(
'start' => '37922180',
'end' => '38097975',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wwox-201'
),
'ENSDART00000150173' => array(
'start' => '37987960',
'end' => '38002450',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'wwox-002'
),
'ENSDART00000150178' => array(
'start' => '37993967',
'end' => '38098358',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wwox-001'
),
'ENSDART00000118097' => array(
'start' => '37871532',
'end' => '37871654',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.167-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007LR_0001' => array(
'genes_in_region' => array(
'ENSG00000186153' => array(
[maximum depth reached]
),
'ENSG00000243101' => array(
[maximum depth reached]
),
'ENSG00000260014' => array(
[maximum depth reached]
),
'ENSG00000260479' => array(
[maximum depth reached]
),
'ENSG00000260511' => array(
[maximum depth reached]
),
'ENSG00000260733' => array(
[maximum depth reached]
),
'ENSG00000260816' => array(
[maximum depth reached]
),
'ENSG00000260969' => array(
[maximum depth reached]
),
'ENSG00000261537' => array(
[maximum depth reached]
),
'ENSG00000261722' => array(
[maximum depth reached]
),
'ENSG00000261837' => array(
[maximum depth reached]
),
'ENSG00000277954' => array(
[maximum depth reached]
),
'ENSG00000279129' => array(
[maximum depth reached]
),
'ENSG00000279732' => array(
[maximum depth reached]
),
'ENSG00000279887' => array(
[maximum depth reached]
),
'ENSG00000280115' => array(
[maximum depth reached]
),
'ENSG00000280190' => array(
[maximum depth reached]
),
'ENSG00000280274' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Liver',
(int) 3 => 'Lung',
(int) 4 => 'Ovary',
(int) 5 => 'Breast',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Bladder',
(int) 25 => 'Liver',
(int) 26 => 'Placenta',
(int) 27 => 'Adrenal',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Heart',
(int) 34 => 'Liver',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Testis',
(int) 38 => 'Adipose',
(int) 39 => 'Adrenal',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Muscle',
(int) 44 => 'Testis',
(int) 45 => 'Colon',
(int) 46 => 'Liver',
(int) 47 => 'Adipose',
(int) 48 => 'Brain',
(int) 49 => 'Colon',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Lung',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Adipose',
(int) 57 => 'Adrenal',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Kidney',
(int) 62 => 'Lung',
(int) 63 => 'Testis',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Liver',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Heart',
(int) 77 => 'Liver',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Testis',
(int) 81 => 'Bladder',
(int) 82 => 'Breast',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Heart',
(int) 86 => 'Liver',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Heart',
(int) 90 => 'Testis',
(int) 91 => 'Adrenal',
(int) 92 => 'Breast',
(int) 93 => 'Kidney',
(int) 94 => 'Liver',
(int) 95 => 'Testis',
(int) 96 => 'Adipose',
(int) 97 => 'Adrenal',
(int) 98 => 'Bladder',
(int) 99 => 'Brain',
(int) 100 => 'Breast',
(int) 101 => 'Colon',
(int) 102 => 'Heart',
(int) 103 => 'Kidney',
(int) 104 => 'Liver',
(int) 105 => 'Lung',
(int) 106 => 'Muscle',
(int) 107 => 'Ovary',
(int) 108 => 'Placenta',
(int) 109 => 'Testis',
(int) 110 => 'Bladder',
(int) 111 => 'Kidney',
(int) 112 => 'Liver',
(int) 113 => 'Ovary',
(int) 114 => 'Testis',
(int) 115 => 'Adrenal',
(int) 116 => 'Bladder',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Colon',
(int) 120 => 'Heart',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Adipose',
(int) 124 => 'Adrenal',
(int) 125 => 'Brain',
(int) 126 => 'Breast',
(int) 127 => 'Colon',
(int) 128 => 'Heart',
(int) 129 => 'Liver',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Brain',
(int) 134 => 'Breast',
(int) 135 => 'Colon',
(int) 136 => 'Heart',
(int) 137 => 'Lung',
(int) 138 => 'Testis',
(int) 139 => 'Adipose',
(int) 140 => 'Adrenal',
(int) 141 => 'Bladder',
(int) 142 => 'Brain',
(int) 143 => 'Breast',
(int) 144 => 'Colon',
(int) 145 => 'Heart',
(int) 146 => 'Kidney',
(int) 147 => 'Liver',
(int) 148 => 'Lung',
(int) 149 => 'Muscle',
(int) 150 => 'Ovary',
(int) 151 => 'Placenta',
(int) 152 => 'Testis',
(int) 153 => 'Bladder',
(int) 154 => 'Breast',
(int) 155 => 'Colon',
(int) 156 => 'Heart',
(int) 157 => 'Kidney',
(int) 158 => 'Liver',
(int) 159 => 'Lung',
(int) 160 => 'Muscle',
(int) 161 => 'Ovary',
(int) 162 => 'Placenta',
(int) 163 => 'Testis',
(int) 164 => 'Adipose',
(int) 165 => 'Adrenal',
(int) 166 => 'Bladder',
(int) 167 => 'Brain',
(int) 168 => 'Breast',
(int) 169 => 'Colon',
(int) 170 => 'Heart',
(int) 171 => 'Kidney',
(int) 172 => 'Liver',
(int) 173 => 'Lung',
(int) 174 => 'Muscle',
(int) 175 => 'Ovary',
(int) 176 => 'Placenta',
(int) 177 => 'Testis',
(int) 178 => 'Testis',
(int) 179 => 'Adipose',
(int) 180 => 'Adrenal',
(int) 181 => 'Bladder',
(int) 182 => 'Brain',
(int) 183 => 'Breast',
(int) 184 => 'Colon',
(int) 185 => 'Heart',
(int) 186 => 'Kidney',
(int) 187 => 'Liver',
(int) 188 => 'Lung',
(int) 189 => 'Muscle',
(int) 190 => 'Ovary',
(int) 191 => 'Testis',
(int) 192 => 'Adrenal',
(int) 193 => 'Bladder',
(int) 194 => 'Brain',
(int) 195 => 'Colon',
(int) 196 => 'Heart',
(int) 197 => 'Lung',
(int) 198 => 'Muscle',
(int) 199 => 'Adrenal',
(int) 200 => 'Bladder',
(int) 201 => 'Brain',
(int) 202 => 'Breast',
(int) 203 => 'Colon',
(int) 204 => 'Heart',
(int) 205 => 'Kidney',
(int) 206 => 'Liver',
(int) 207 => 'Lung',
(int) 208 => 'Muscle',
(int) 209 => 'Ovary',
(int) 210 => 'Testis',
(int) 211 => 'Adipose',
(int) 212 => 'Bladder',
(int) 213 => 'Brain',
(int) 214 => 'Breast',
(int) 215 => 'Colon',
(int) 216 => 'Heart',
(int) 217 => 'Kidney',
(int) 218 => 'Liver',
(int) 219 => 'Lung',
(int) 220 => 'Muscle',
(int) 221 => 'Ovary',
(int) 222 => 'Placenta',
(int) 223 => 'Testis'
)
),
'CIL_0007LR_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000004637' => array(
[maximum depth reached]
),
'ENSMUSG00000089723' => array(
[maximum depth reached]
),
'ENSMUSG00000089797' => array(
[maximum depth reached]
),
'ENSMUSG00000090217' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Adipose',
(int) 21 => 'Bladder',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Liver',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Adipose',
(int) 33 => 'Breast',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Ovary',
(int) 39 => 'Adrenal',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Kidney',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Bladder',
(int) 49 => 'Muscle',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Bladder',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Testis'
)
),
'CIL_0007LR_0004' => array(
'genes_in_region' => array(
'ENSDARG00000007614' => array(
[maximum depth reached]
),
'ENSDARG00000082003' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Heart',
(int) 6 => 'Liver',
(int) 7 => 'Brain',
(int) 8 => 'Heart',
(int) 9 => 'Kidney',
(int) 10 => 'Liver',
(int) 11 => 'Muscle',
(int) 12 => 'Brain'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LR_0003',
'tax_id' => '7955',
'chromosome' => '18',
'seq_start' => '29655235',
'seq_end' => '29723783',
'region_length' => '68548',
'region_type' => 'UCNEbase',
'el_id' => 'WWOX'
)
)
$gene_el = array(
'ENSMUST00000159472' => array(
'Adipose' => array(
'average_FPKM' => '0.231',
'stddev_FPKM' => '0.08'
),
'Adrenal' => array(
'average_FPKM' => '0.161',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.355',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.346',
'stddev_FPKM' => '0.09'
),
'Colon' => array(
'average_FPKM' => '0.192',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.154',
'stddev_FPKM' => '0.06'
),
'Kidney' => array(
'average_FPKM' => '0.108',
'stddev_FPKM' => '0.01'
),
'Liver' => array(
'average_FPKM' => '0.451',
'stddev_FPKM' => '0.23'
),
'Lung' => array(
'average_FPKM' => '0.242',
'stddev_FPKM' => '0.08'
),
'Ovary' => array(
'average_FPKM' => '0.514',
'stddev_FPKM' => '0.27'
),
'Placenta' => array(
'average_FPKM' => '0.171',
'stddev_FPKM' => '0.07'
),
'Testis' => array(
'average_FPKM' => '0.165',
'stddev_FPKM' => '0.06'
)
)
)
$gene_key = 'ENSMUSG00000090217'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.231',
'stddev_FPKM' => '0.08'
),
'Adrenal' => array(
'average_FPKM' => '0.161',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.355',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.346',
'stddev_FPKM' => '0.09'
),
'Colon' => array(
'average_FPKM' => '0.192',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.154',
'stddev_FPKM' => '0.06'
),
'Kidney' => array(
'average_FPKM' => '0.108',
'stddev_FPKM' => '0.01'
),
'Liver' => array(
'average_FPKM' => '0.451',
'stddev_FPKM' => '0.23'
),
'Lung' => array(
'average_FPKM' => '0.242',
'stddev_FPKM' => '0.08'
),
'Ovary' => array(
'average_FPKM' => '0.514',
'stddev_FPKM' => '0.27'
),
'Placenta' => array(
'average_FPKM' => '0.171',
'stddev_FPKM' => '0.07'
),
'Testis' => array(
'average_FPKM' => '0.165',
'stddev_FPKM' => '0.06'
)
)
$tran_key = 'ENSMUST00000159472'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007LR_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LR_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LR_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000186153' => 'WW domain containing oxidoreductase',
'ENSG00000222244' => 'RNA, 5S ribosomal pseudogene 431',
'ENSG00000243101' => 'ribosomal protein S3 pseudogene 7',
'ENSG00000260014' => 'LSM3 pseudogene 5',
'ENSG00000260479' => null,
'ENSG00000260511' => null,
'ENSG00000260694' => null,
'ENSG00000260733' => null,
'ENSG00000260816' => null,
'ENSG00000260969' => null,
'ENSG00000261537' => null,
'ENSG00000261722' => null,
'ENSG00000261837' => null,
'ENSG00000277954' => null,
'ENSG00000279129' => null,
'ENSG00000279732' => null,
'ENSG00000279887' => null,
'ENSG00000280115' => null,
'ENSG00000280190' => null,
'ENSG00000280274' => null,
'ENSMUSG00000004637' => 'WW domain-containing oxidoreductase',
'ENSMUSG00000088428' => 'predicted gene, 22556',
'ENSMUSG00000089723' => 'predicted gene 16117',
'ENSMUSG00000089797' => 'predicted gene 16118',
'ENSMUSG00000090217' => 'predicted gene 16116',
'ENSDARG00000007614' => 'WW domain containing oxidoreductase',
'ENSDARG00000082003' => '5S ribosomal RNA'
),
'gene_name_arr' => array(
'ENSG00000186153' => 'WWOX',
'ENSG00000222244' => 'RNA5SP431',
'ENSG00000243101' => 'RPS3P7',
'ENSG00000260014' => 'LSM3P5',
'ENSG00000260479' => 'RP11-556H2.3',
'ENSG00000260511' => 'RP11-556H2.2',
'ENSG00000260694' => 'RP11-556H2.4',
'ENSG00000260733' => 'RP11-264L1.4',
'ENSG00000260816' => 'RP11-319G9.3',
'ENSG00000260969' => 'RP11-190D6.2',
'ENSG00000261537' => 'RP11-319G9.5',
'ENSG00000261722' => 'RP11-679B19.2',
'ENSG00000261837' => 'RP11-264L1.3',
'ENSG00000277954' => 'RP11-679B19.1',
'ENSG00000279129' => 'RP11-264L1.2',
'ENSG00000279732' => 'RP11-319G9.4',
'ENSG00000279887' => 'RP11-264L1.1',
'ENSG00000280115' => 'RP11-133M8.3',
'ENSG00000280190' => 'RP11-319G9.1',
'ENSG00000280274' => 'RP11-556H2.1',
'ENSMUSG00000004637' => 'Wwox',
'ENSMUSG00000088428' => 'Gm22556',
'ENSMUSG00000089723' => 'Gm16117',
'ENSMUSG00000089797' => 'Gm16118',
'ENSMUSG00000090217' => 'Gm16116',
'ENSDARG00000007614' => 'wwox',
'ENSDARG00000082003' => '5S_rRNA'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 3 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 36 => 'Bladder',
(int) 53 => 'Brain',
(int) 77 => 'Breast',
(int) 102 => 'Colon',
(int) 126 => 'Heart',
(int) 153 => 'Kidney',
(int) 175 => 'Liver',
(int) 203 => 'Lung',
(int) 222 => 'Muscle',
(int) 241 => 'Ovary',
(int) 265 => 'Placenta',
(int) 284 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 54,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000355860' => array(
'start' => '78099679',
'end' => '78278696',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-001'
),
'ENST00000402655' => array(
'start' => '78099654',
'end' => '79212667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-003'
),
'ENST00000406884' => array(
'start' => '78099654',
'end' => '79212667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-004'
),
'ENST00000408984' => array(
'start' => '78099694',
'end' => '78780449',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-006'
),
'ENST00000539474' => array(
'start' => '78099654',
'end' => '79212667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-016'
),
'ENST00000561846' => array(
'start' => '78099735',
'end' => '78281049',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-015'
),
'ENST00000562214' => array(
'start' => '78099656',
'end' => '78119076',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-008'
),
'ENST00000562639' => array(
'start' => '78130049',
'end' => '78432603',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-013'
),
'ENST00000563358' => array(
'start' => '78099786',
'end' => '78278703',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-011'
),
'ENST00000565562' => array(
'start' => '78099734',
'end' => '78111992',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-010'
),
'ENST00000565791' => array(
'start' => '78145917',
'end' => '78270586',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-012'
),
'ENST00000566103' => array(
'start' => '79196359',
'end' => '79212300',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-014'
),
'ENST00000566662' => array(
'start' => '78099656',
'end' => '78424956',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WWOX-009'
),
'ENST00000566780' => array(
'start' => '78099413',
'end' => '79212667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-005'
),
'ENST00000569332' => array(
'start' => '78099626',
'end' => '79212319',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WWOX-002'
),
'ENST00000569818' => array(
'start' => '78099675',
'end' => '78100199',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-007'
),
'ENST00000620008' => array(
'start' => '78424871',
'end' => '78432752',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-201'
),
'ENST00000410312' => array(
'start' => '79264454',
'end' => '79264573',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP431-201'
),
'ENST00000488662' => array(
'start' => '78825281',
'end' => '78826006',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS3P7-001'
),
'ENST00000566307' => array(
'start' => '78355529',
'end' => '78355834',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'LSM3P5-001'
),
'ENST00000563230' => array(
'start' => '79090050',
'end' => '79101754',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-556H2.3-001'
),
'ENST00000562685' => array(
'start' => '79105957',
'end' => '79110882',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-556H2.2-001'
),
'ENST00000567386' => array(
'start' => '79077376',
'end' => '79078234',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-556H2.4-001'
),
'ENST00000563408' => array(
'start' => '78495926',
'end' => '78506568',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-264L1.4-001'
),
'ENST00000568885' => array(
'start' => '78895361',
'end' => '78899644',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-319G9.3-001'
),
'ENST00000567099' => array(
'start' => '78237362',
'end' => '78241218',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-190D6.2-001'
),
'ENST00000561938' => array(
'start' => '78994345',
'end' => '79004730',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-319G9.5-001'
),
'ENST00000569677' => array(
'start' => '79212711',
'end' => '79229453',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-679B19.2-001'
),
'ENST00000568764' => array(
'start' => '78534374',
'end' => '78535648',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-264L1.3-001'
),
'ENST00000622621' => array(
'start' => '79202624',
'end' => '79206739',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-679B19.1-001'
),
'ENST00000624947' => array(
'start' => '78550739',
'end' => '78553296',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-264L1.2-001'
),
'ENST00000625162' => array(
'start' => '78550739',
'end' => '78553290',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-264L1.2-201'
),
'ENST00000625055' => array(
'start' => '78981722',
'end' => '78981843',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-319G9.4-001'
),
'ENST00000623121' => array(
'start' => '78525189',
'end' => '78526535',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-264L1.1-001'
),
'ENST00000625152' => array(
'start' => '78872739',
'end' => '78873505',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-133M8.3-001'
),
'ENST00000624371' => array(
'start' => '78890231',
'end' => '78892302',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-319G9.1-001'
),
'ENST00000625119' => array(
'start' => '79016136',
'end' => '79017429',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-556H2.1-001'
),
'ENSMUST00000004756' => array(
'start' => '114439655',
'end' => '115352708',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wwox-001'
),
'ENSMUST00000109107' => array(
'start' => '114439702',
'end' => '114474529',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wwox-002'
),
'ENSMUST00000109108' => array(
'start' => '114439695',
'end' => '114875238',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wwox-004'
),
'ENSMUST00000159870' => array(
'start' => '114712167',
'end' => '115019702',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-007'
),
'ENSMUST00000160005' => array(
'start' => '114439702',
'end' => '114453818',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-005'
),
'ENSMUST00000160205' => array(
'start' => '114608436',
'end' => '114706324',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-008'
),
'ENSMUST00000160862' => array(
'start' => '114439695',
'end' => '114718679',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wwox-003'
),
'ENSMUST00000161753' => array(
'start' => '114448210',
'end' => '114514288',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-009'
),
'ENSMUST00000162052' => array(
'start' => '114712167',
'end' => '115352143',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-006'
),
'ENSMUST00000157803' => array(
'start' => '115052814',
'end' => '115052913',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'Gm22556-201'
),
'ENSMUST00000160544' => array(
'start' => '114639546',
'end' => '114642114',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm16117-001'
),
'ENSMUST00000161914' => array(
'start' => '114698439',
'end' => '114708006',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm16118-001'
),
'ENSMUST00000159472' => array(
'start' => '114591303',
'end' => '114594900',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm16116-001'
),
'ENSDART00000020806' => array(
'start' => '37922180',
'end' => '38097975',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wwox-201'
),
'ENSDART00000150173' => array(
'start' => '37987960',
'end' => '38002450',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'wwox-002'
),
'ENSDART00000150178' => array(
'start' => '37993967',
'end' => '38098358',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wwox-001'
),
'ENSDART00000118097' => array(
'start' => '37871532',
'end' => '37871654',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.167-201'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007LR_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LR_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007LR_0004' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007LR_0001' => array(
'genes_in_region' => array(
'ENSG00000186153' => array(
[maximum depth reached]
),
'ENSG00000243101' => array(
[maximum depth reached]
),
'ENSG00000260014' => array(
[maximum depth reached]
),
'ENSG00000260479' => array(
[maximum depth reached]
),
'ENSG00000260511' => array(
[maximum depth reached]
),
'ENSG00000260733' => array(
[maximum depth reached]
),
'ENSG00000260816' => array(
[maximum depth reached]
),
'ENSG00000260969' => array(
[maximum depth reached]
),
'ENSG00000261537' => array(
[maximum depth reached]
),
'ENSG00000261722' => array(
[maximum depth reached]
),
'ENSG00000261837' => array(
[maximum depth reached]
),
'ENSG00000277954' => array(
[maximum depth reached]
),
'ENSG00000279129' => array(
[maximum depth reached]
),
'ENSG00000279732' => array(
[maximum depth reached]
),
'ENSG00000279887' => array(
[maximum depth reached]
),
'ENSG00000280115' => array(
[maximum depth reached]
),
'ENSG00000280190' => array(
[maximum depth reached]
),
'ENSG00000280274' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Liver',
(int) 3 => 'Lung',
(int) 4 => 'Ovary',
(int) 5 => 'Breast',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Bladder',
(int) 25 => 'Liver',
(int) 26 => 'Placenta',
(int) 27 => 'Adrenal',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Heart',
(int) 34 => 'Liver',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Testis',
(int) 38 => 'Adipose',
(int) 39 => 'Adrenal',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Muscle',
(int) 44 => 'Testis',
(int) 45 => 'Colon',
(int) 46 => 'Liver',
(int) 47 => 'Adipose',
(int) 48 => 'Brain',
(int) 49 => 'Colon',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Lung',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Adipose',
(int) 57 => 'Adrenal',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Kidney',
(int) 62 => 'Lung',
(int) 63 => 'Testis',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Liver',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Heart',
(int) 77 => 'Liver',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Testis',
(int) 81 => 'Bladder',
(int) 82 => 'Breast',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Heart',
(int) 86 => 'Liver',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Heart',
(int) 90 => 'Testis',
(int) 91 => 'Adrenal',
(int) 92 => 'Breast',
(int) 93 => 'Kidney',
(int) 94 => 'Liver',
(int) 95 => 'Testis',
(int) 96 => 'Adipose',
(int) 97 => 'Adrenal',
(int) 98 => 'Bladder',
(int) 99 => 'Brain',
(int) 100 => 'Breast',
(int) 101 => 'Colon',
(int) 102 => 'Heart',
(int) 103 => 'Kidney',
(int) 104 => 'Liver',
(int) 105 => 'Lung',
(int) 106 => 'Muscle',
(int) 107 => 'Ovary',
(int) 108 => 'Placenta',
(int) 109 => 'Testis',
(int) 110 => 'Bladder',
(int) 111 => 'Kidney',
(int) 112 => 'Liver',
(int) 113 => 'Ovary',
(int) 114 => 'Testis',
(int) 115 => 'Adrenal',
(int) 116 => 'Bladder',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Colon',
(int) 120 => 'Heart',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Adipose',
(int) 124 => 'Adrenal',
(int) 125 => 'Brain',
(int) 126 => 'Breast',
(int) 127 => 'Colon',
(int) 128 => 'Heart',
(int) 129 => 'Liver',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Brain',
(int) 134 => 'Breast',
(int) 135 => 'Colon',
(int) 136 => 'Heart',
(int) 137 => 'Lung',
(int) 138 => 'Testis',
(int) 139 => 'Adipose',
(int) 140 => 'Adrenal',
(int) 141 => 'Bladder',
(int) 142 => 'Brain',
(int) 143 => 'Breast',
(int) 144 => 'Colon',
(int) 145 => 'Heart',
(int) 146 => 'Kidney',
(int) 147 => 'Liver',
(int) 148 => 'Lung',
(int) 149 => 'Muscle',
(int) 150 => 'Ovary',
(int) 151 => 'Placenta',
(int) 152 => 'Testis',
(int) 153 => 'Bladder',
(int) 154 => 'Breast',
(int) 155 => 'Colon',
(int) 156 => 'Heart',
(int) 157 => 'Kidney',
(int) 158 => 'Liver',
(int) 159 => 'Lung',
(int) 160 => 'Muscle',
(int) 161 => 'Ovary',
(int) 162 => 'Placenta',
(int) 163 => 'Testis',
(int) 164 => 'Adipose',
(int) 165 => 'Adrenal',
(int) 166 => 'Bladder',
(int) 167 => 'Brain',
(int) 168 => 'Breast',
(int) 169 => 'Colon',
(int) 170 => 'Heart',
(int) 171 => 'Kidney',
(int) 172 => 'Liver',
(int) 173 => 'Lung',
(int) 174 => 'Muscle',
(int) 175 => 'Ovary',
(int) 176 => 'Placenta',
(int) 177 => 'Testis',
(int) 178 => 'Testis',
(int) 179 => 'Adipose',
(int) 180 => 'Adrenal',
(int) 181 => 'Bladder',
(int) 182 => 'Brain',
(int) 183 => 'Breast',
(int) 184 => 'Colon',
(int) 185 => 'Heart',
(int) 186 => 'Kidney',
(int) 187 => 'Liver',
(int) 188 => 'Lung',
(int) 189 => 'Muscle',
(int) 190 => 'Ovary',
(int) 191 => 'Testis',
(int) 192 => 'Adrenal',
(int) 193 => 'Bladder',
(int) 194 => 'Brain',
(int) 195 => 'Colon',
(int) 196 => 'Heart',
(int) 197 => 'Lung',
(int) 198 => 'Muscle',
(int) 199 => 'Adrenal',
(int) 200 => 'Bladder',
(int) 201 => 'Brain',
(int) 202 => 'Breast',
(int) 203 => 'Colon',
(int) 204 => 'Heart',
(int) 205 => 'Kidney',
(int) 206 => 'Liver',
(int) 207 => 'Lung',
(int) 208 => 'Muscle',
(int) 209 => 'Ovary',
(int) 210 => 'Testis',
(int) 211 => 'Adipose',
(int) 212 => 'Bladder',
(int) 213 => 'Brain',
(int) 214 => 'Breast',
(int) 215 => 'Colon',
(int) 216 => 'Heart',
(int) 217 => 'Kidney',
(int) 218 => 'Liver',
(int) 219 => 'Lung',
(int) 220 => 'Muscle',
(int) 221 => 'Ovary',
(int) 222 => 'Placenta',
(int) 223 => 'Testis'
)
),
'CIL_0007LR_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000004637' => array(
[maximum depth reached]
),
'ENSMUSG00000089723' => array(
[maximum depth reached]
),
'ENSMUSG00000089797' => array(
[maximum depth reached]
),
'ENSMUSG00000090217' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Adipose',
(int) 21 => 'Bladder',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Liver',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Adipose',
(int) 33 => 'Breast',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Ovary',
(int) 39 => 'Adrenal',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Kidney',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Bladder',
(int) 49 => 'Muscle',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Bladder',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Testis'
)
),
'CIL_0007LR_0004' => array(
'genes_in_region' => array(
'ENSDARG00000007614' => array(
[maximum depth reached]
),
'ENSDARG00000082003' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Heart',
(int) 6 => 'Liver',
(int) 7 => 'Brain',
(int) 8 => 'Heart',
(int) 9 => 'Kidney',
(int) 10 => 'Liver',
(int) 11 => 'Muscle',
(int) 12 => 'Brain'
)
)
)
$gene_desc_arr = array(
'ENSG00000186153' => 'WW domain containing oxidoreductase',
'ENSG00000222244' => 'RNA, 5S ribosomal pseudogene 431',
'ENSG00000243101' => 'ribosomal protein S3 pseudogene 7',
'ENSG00000260014' => 'LSM3 pseudogene 5',
'ENSG00000260479' => null,
'ENSG00000260511' => null,
'ENSG00000260694' => null,
'ENSG00000260733' => null,
'ENSG00000260816' => null,
'ENSG00000260969' => null,
'ENSG00000261537' => null,
'ENSG00000261722' => null,
'ENSG00000261837' => null,
'ENSG00000277954' => null,
'ENSG00000279129' => null,
'ENSG00000279732' => null,
'ENSG00000279887' => null,
'ENSG00000280115' => null,
'ENSG00000280190' => null,
'ENSG00000280274' => null,
'ENSMUSG00000004637' => 'WW domain-containing oxidoreductase',
'ENSMUSG00000088428' => 'predicted gene, 22556',
'ENSMUSG00000089723' => 'predicted gene 16117',
'ENSMUSG00000089797' => 'predicted gene 16118',
'ENSMUSG00000090217' => 'predicted gene 16116',
'ENSDARG00000007614' => 'WW domain containing oxidoreductase',
'ENSDARG00000082003' => '5S ribosomal RNA'
)
$gene_name_arr = array(
'ENSG00000186153' => 'WWOX',
'ENSG00000222244' => 'RNA5SP431',
'ENSG00000243101' => 'RPS3P7',
'ENSG00000260014' => 'LSM3P5',
'ENSG00000260479' => 'RP11-556H2.3',
'ENSG00000260511' => 'RP11-556H2.2',
'ENSG00000260694' => 'RP11-556H2.4',
'ENSG00000260733' => 'RP11-264L1.4',
'ENSG00000260816' => 'RP11-319G9.3',
'ENSG00000260969' => 'RP11-190D6.2',
'ENSG00000261537' => 'RP11-319G9.5',
'ENSG00000261722' => 'RP11-679B19.2',
'ENSG00000261837' => 'RP11-264L1.3',
'ENSG00000277954' => 'RP11-679B19.1',
'ENSG00000279129' => 'RP11-264L1.2',
'ENSG00000279732' => 'RP11-319G9.4',
'ENSG00000279887' => 'RP11-264L1.1',
'ENSG00000280115' => 'RP11-133M8.3',
'ENSG00000280190' => 'RP11-319G9.1',
'ENSG00000280274' => 'RP11-556H2.1',
'ENSMUSG00000004637' => 'Wwox',
'ENSMUSG00000088428' => 'Gm22556',
'ENSMUSG00000089723' => 'Gm16117',
'ENSMUSG00000089797' => 'Gm16118',
'ENSMUSG00000090217' => 'Gm16116',
'ENSDARG00000007614' => 'wwox',
'ENSDARG00000082003' => '5S_rRNA'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LR_0001',
'tax_id' => '9606',
'chromosome' => '16',
'seq_start' => '78176540',
'seq_end' => '79348472',
'region_length' => '1171932',
'region_type' => 'UCNEbase',
'el_id' => 'WWOX'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LR_0002',
'tax_id' => '10090',
'chromosome' => '8',
'seq_start' => '114499853',
'seq_end' => '115474177',
'region_length' => '974324',
'region_type' => 'UCNEbase',
'el_id' => 'WWOX'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LR_0003',
'tax_id' => '7955',
'chromosome' => '18',
'seq_start' => '29655235',
'seq_end' => '29723783',
'region_length' => '68548',
'region_type' => 'UCNEbase',
'el_id' => 'WWOX'
)
),
(int) 3 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LR_0004',
'tax_id' => '7955',
'chromosome' => '25',
'seq_start' => '37835713',
'seq_end' => '38070923',
'region_length' => '235210',
'region_type' => 'UCNEbase',
'el_id' => 'WWOX'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 18 => 'Adrenal',
(int) 36 => 'Bladder',
(int) 53 => 'Brain',
(int) 77 => 'Breast',
(int) 102 => 'Colon',
(int) 126 => 'Heart',
(int) 153 => 'Kidney',
(int) 175 => 'Liver',
(int) 203 => 'Lung',
(int) 222 => 'Muscle',
(int) 241 => 'Ovary',
(int) 265 => 'Placenta',
(int) 284 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 54
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000355860' => array(
'start' => '78099679',
'end' => '78278696',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-001'
),
'ENST00000402655' => array(
'start' => '78099654',
'end' => '79212667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-003'
),
'ENST00000406884' => array(
'start' => '78099654',
'end' => '79212667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-004'
),
'ENST00000408984' => array(
'start' => '78099694',
'end' => '78780449',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-006'
),
'ENST00000539474' => array(
'start' => '78099654',
'end' => '79212667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-016'
),
'ENST00000561846' => array(
'start' => '78099735',
'end' => '78281049',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-015'
),
'ENST00000562214' => array(
'start' => '78099656',
'end' => '78119076',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-008'
),
'ENST00000562639' => array(
'start' => '78130049',
'end' => '78432603',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-013'
),
'ENST00000563358' => array(
'start' => '78099786',
'end' => '78278703',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-011'
),
'ENST00000565562' => array(
'start' => '78099734',
'end' => '78111992',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-010'
),
'ENST00000565791' => array(
'start' => '78145917',
'end' => '78270586',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-012'
),
'ENST00000566103' => array(
'start' => '79196359',
'end' => '79212300',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'WWOX-014'
),
'ENST00000566662' => array(
'start' => '78099656',
'end' => '78424956',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WWOX-009'
),
'ENST00000566780' => array(
'start' => '78099413',
'end' => '79212667',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-005'
),
'ENST00000569332' => array(
'start' => '78099626',
'end' => '79212319',
'transcript_biotype' => 'nonsense_mediated_decay',
'transcript_name' => 'WWOX-002'
),
'ENST00000569818' => array(
'start' => '78099675',
'end' => '78100199',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-007'
),
'ENST00000620008' => array(
'start' => '78424871',
'end' => '78432752',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'WWOX-201'
),
'ENST00000410312' => array(
'start' => '79264454',
'end' => '79264573',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP431-201'
),
'ENST00000488662' => array(
'start' => '78825281',
'end' => '78826006',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RPS3P7-001'
),
'ENST00000566307' => array(
'start' => '78355529',
'end' => '78355834',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'LSM3P5-001'
),
'ENST00000563230' => array(
'start' => '79090050',
'end' => '79101754',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-556H2.3-001'
),
'ENST00000562685' => array(
'start' => '79105957',
'end' => '79110882',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-556H2.2-001'
),
'ENST00000567386' => array(
'start' => '79077376',
'end' => '79078234',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-556H2.4-001'
),
'ENST00000563408' => array(
'start' => '78495926',
'end' => '78506568',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-264L1.4-001'
),
'ENST00000568885' => array(
'start' => '78895361',
'end' => '78899644',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-319G9.3-001'
),
'ENST00000567099' => array(
'start' => '78237362',
'end' => '78241218',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-190D6.2-001'
),
'ENST00000561938' => array(
'start' => '78994345',
'end' => '79004730',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-319G9.5-001'
),
'ENST00000569677' => array(
'start' => '79212711',
'end' => '79229453',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP11-679B19.2-001'
),
'ENST00000568764' => array(
'start' => '78534374',
'end' => '78535648',
'transcript_biotype' => 'sense_intronic',
'transcript_name' => 'RP11-264L1.3-001'
),
'ENST00000622621' => array(
'start' => '79202624',
'end' => '79206739',
'transcript_biotype' => 'antisense',
'transcript_name' => 'RP11-679B19.1-001'
),
'ENST00000624947' => array(
'start' => '78550739',
'end' => '78553296',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-264L1.2-001'
),
'ENST00000625162' => array(
'start' => '78550739',
'end' => '78553290',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-264L1.2-201'
),
'ENST00000625055' => array(
'start' => '78981722',
'end' => '78981843',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-319G9.4-001'
),
'ENST00000623121' => array(
'start' => '78525189',
'end' => '78526535',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-264L1.1-001'
),
'ENST00000625152' => array(
'start' => '78872739',
'end' => '78873505',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-133M8.3-001'
),
'ENST00000624371' => array(
'start' => '78890231',
'end' => '78892302',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-319G9.1-001'
),
'ENST00000625119' => array(
'start' => '79016136',
'end' => '79017429',
'transcript_biotype' => 'TEC',
'transcript_name' => 'RP11-556H2.1-001'
),
'ENSMUST00000004756' => array(
'start' => '114439655',
'end' => '115352708',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wwox-001'
),
'ENSMUST00000109107' => array(
'start' => '114439702',
'end' => '114474529',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wwox-002'
),
'ENSMUST00000109108' => array(
'start' => '114439695',
'end' => '114875238',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wwox-004'
),
'ENSMUST00000159870' => array(
'start' => '114712167',
'end' => '115019702',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-007'
),
'ENSMUST00000160005' => array(
'start' => '114439702',
'end' => '114453818',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-005'
),
'ENSMUST00000160205' => array(
'start' => '114608436',
'end' => '114706324',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-008'
),
'ENSMUST00000160862' => array(
'start' => '114439695',
'end' => '114718679',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Wwox-003'
),
'ENSMUST00000161753' => array(
'start' => '114448210',
'end' => '114514288',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-009'
),
'ENSMUST00000162052' => array(
'start' => '114712167',
'end' => '115352143',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'Wwox-006'
),
'ENSMUST00000157803' => array(
'start' => '115052814',
'end' => '115052913',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'Gm22556-201'
),
'ENSMUST00000160544' => array(
'start' => '114639546',
'end' => '114642114',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm16117-001'
),
'ENSMUST00000161914' => array(
'start' => '114698439',
'end' => '114708006',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm16118-001'
),
'ENSMUST00000159472' => array(
'start' => '114591303',
'end' => '114594900',
'transcript_biotype' => 'antisense',
'transcript_name' => 'Gm16116-001'
),
'ENSDART00000020806' => array(
'start' => '37922180',
'end' => '38097975',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wwox-201'
),
'ENSDART00000150173' => array(
'start' => '37987960',
'end' => '38002450',
'transcript_biotype' => 'processed_transcript',
'transcript_name' => 'wwox-002'
),
'ENSDART00000150178' => array(
'start' => '37993967',
'end' => '38098358',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'wwox-001'
),
'ENSDART00000118097' => array(
'start' => '37871532',
'end' => '37871654',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.167-201'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007LR_0001' => array(
'genes_in_region' => array(
'ENSG00000186153' => array(
[maximum depth reached]
),
'ENSG00000243101' => array(
[maximum depth reached]
),
'ENSG00000260014' => array(
[maximum depth reached]
),
'ENSG00000260479' => array(
[maximum depth reached]
),
'ENSG00000260511' => array(
[maximum depth reached]
),
'ENSG00000260733' => array(
[maximum depth reached]
),
'ENSG00000260816' => array(
[maximum depth reached]
),
'ENSG00000260969' => array(
[maximum depth reached]
),
'ENSG00000261537' => array(
[maximum depth reached]
),
'ENSG00000261722' => array(
[maximum depth reached]
),
'ENSG00000261837' => array(
[maximum depth reached]
),
'ENSG00000277954' => array(
[maximum depth reached]
),
'ENSG00000279129' => array(
[maximum depth reached]
),
'ENSG00000279732' => array(
[maximum depth reached]
),
'ENSG00000279887' => array(
[maximum depth reached]
),
'ENSG00000280115' => array(
[maximum depth reached]
),
'ENSG00000280190' => array(
[maximum depth reached]
),
'ENSG00000280274' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Liver',
(int) 3 => 'Lung',
(int) 4 => 'Ovary',
(int) 5 => 'Breast',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Muscle',
(int) 10 => 'Ovary',
(int) 11 => 'Placenta',
(int) 12 => 'Testis',
(int) 13 => 'Adipose',
(int) 14 => 'Brain',
(int) 15 => 'Breast',
(int) 16 => 'Colon',
(int) 17 => 'Heart',
(int) 18 => 'Kidney',
(int) 19 => 'Liver',
(int) 20 => 'Lung',
(int) 21 => 'Ovary',
(int) 22 => 'Placenta',
(int) 23 => 'Testis',
(int) 24 => 'Bladder',
(int) 25 => 'Liver',
(int) 26 => 'Placenta',
(int) 27 => 'Adrenal',
(int) 28 => 'Kidney',
(int) 29 => 'Lung',
(int) 30 => 'Brain',
(int) 31 => 'Breast',
(int) 32 => 'Colon',
(int) 33 => 'Heart',
(int) 34 => 'Liver',
(int) 35 => 'Muscle',
(int) 36 => 'Ovary',
(int) 37 => 'Testis',
(int) 38 => 'Adipose',
(int) 39 => 'Adrenal',
(int) 40 => 'Breast',
(int) 41 => 'Colon',
(int) 42 => 'Heart',
(int) 43 => 'Muscle',
(int) 44 => 'Testis',
(int) 45 => 'Colon',
(int) 46 => 'Liver',
(int) 47 => 'Adipose',
(int) 48 => 'Brain',
(int) 49 => 'Colon',
(int) 50 => 'Heart',
(int) 51 => 'Kidney',
(int) 52 => 'Lung',
(int) 53 => 'Ovary',
(int) 54 => 'Placenta',
(int) 55 => 'Testis',
(int) 56 => 'Adipose',
(int) 57 => 'Adrenal',
(int) 58 => 'Brain',
(int) 59 => 'Breast',
(int) 60 => 'Colon',
(int) 61 => 'Kidney',
(int) 62 => 'Lung',
(int) 63 => 'Testis',
(int) 64 => 'Ovary',
(int) 65 => 'Placenta',
(int) 66 => 'Testis',
(int) 67 => 'Liver',
(int) 68 => 'Muscle',
(int) 69 => 'Ovary',
(int) 70 => 'Placenta',
(int) 71 => 'Adipose',
(int) 72 => 'Adrenal',
(int) 73 => 'Brain',
(int) 74 => 'Breast',
(int) 75 => 'Colon',
(int) 76 => 'Heart',
(int) 77 => 'Liver',
(int) 78 => 'Muscle',
(int) 79 => 'Ovary',
(int) 80 => 'Testis',
(int) 81 => 'Bladder',
(int) 82 => 'Breast',
(int) 83 => 'Placenta',
(int) 84 => 'Testis',
(int) 85 => 'Heart',
(int) 86 => 'Liver',
(int) 87 => 'Placenta',
(int) 88 => 'Testis',
(int) 89 => 'Heart',
(int) 90 => 'Testis',
(int) 91 => 'Adrenal',
(int) 92 => 'Breast',
(int) 93 => 'Kidney',
(int) 94 => 'Liver',
(int) 95 => 'Testis',
(int) 96 => 'Adipose',
(int) 97 => 'Adrenal',
(int) 98 => 'Bladder',
(int) 99 => 'Brain',
(int) 100 => 'Breast',
(int) 101 => 'Colon',
(int) 102 => 'Heart',
(int) 103 => 'Kidney',
(int) 104 => 'Liver',
(int) 105 => 'Lung',
(int) 106 => 'Muscle',
(int) 107 => 'Ovary',
(int) 108 => 'Placenta',
(int) 109 => 'Testis',
(int) 110 => 'Bladder',
(int) 111 => 'Kidney',
(int) 112 => 'Liver',
(int) 113 => 'Ovary',
(int) 114 => 'Testis',
(int) 115 => 'Adrenal',
(int) 116 => 'Bladder',
(int) 117 => 'Brain',
(int) 118 => 'Breast',
(int) 119 => 'Colon',
(int) 120 => 'Heart',
(int) 121 => 'Ovary',
(int) 122 => 'Testis',
(int) 123 => 'Adipose',
(int) 124 => 'Adrenal',
(int) 125 => 'Brain',
(int) 126 => 'Breast',
(int) 127 => 'Colon',
(int) 128 => 'Heart',
(int) 129 => 'Liver',
(int) 130 => 'Testis',
(int) 131 => 'Adipose',
(int) 132 => 'Adrenal',
(int) 133 => 'Brain',
(int) 134 => 'Breast',
(int) 135 => 'Colon',
(int) 136 => 'Heart',
(int) 137 => 'Lung',
(int) 138 => 'Testis',
(int) 139 => 'Adipose',
(int) 140 => 'Adrenal',
(int) 141 => 'Bladder',
(int) 142 => 'Brain',
(int) 143 => 'Breast',
(int) 144 => 'Colon',
(int) 145 => 'Heart',
(int) 146 => 'Kidney',
(int) 147 => 'Liver',
(int) 148 => 'Lung',
(int) 149 => 'Muscle',
(int) 150 => 'Ovary',
(int) 151 => 'Placenta',
(int) 152 => 'Testis',
(int) 153 => 'Bladder',
(int) 154 => 'Breast',
(int) 155 => 'Colon',
(int) 156 => 'Heart',
(int) 157 => 'Kidney',
(int) 158 => 'Liver',
(int) 159 => 'Lung',
(int) 160 => 'Muscle',
(int) 161 => 'Ovary',
(int) 162 => 'Placenta',
(int) 163 => 'Testis',
(int) 164 => 'Adipose',
(int) 165 => 'Adrenal',
(int) 166 => 'Bladder',
(int) 167 => 'Brain',
(int) 168 => 'Breast',
(int) 169 => 'Colon',
(int) 170 => 'Heart',
(int) 171 => 'Kidney',
(int) 172 => 'Liver',
(int) 173 => 'Lung',
(int) 174 => 'Muscle',
(int) 175 => 'Ovary',
(int) 176 => 'Placenta',
(int) 177 => 'Testis',
(int) 178 => 'Testis',
(int) 179 => 'Adipose',
(int) 180 => 'Adrenal',
(int) 181 => 'Bladder',
(int) 182 => 'Brain',
(int) 183 => 'Breast',
(int) 184 => 'Colon',
(int) 185 => 'Heart',
(int) 186 => 'Kidney',
(int) 187 => 'Liver',
(int) 188 => 'Lung',
(int) 189 => 'Muscle',
(int) 190 => 'Ovary',
(int) 191 => 'Testis',
(int) 192 => 'Adrenal',
(int) 193 => 'Bladder',
(int) 194 => 'Brain',
(int) 195 => 'Colon',
(int) 196 => 'Heart',
(int) 197 => 'Lung',
(int) 198 => 'Muscle',
(int) 199 => 'Adrenal',
(int) 200 => 'Bladder',
(int) 201 => 'Brain',
(int) 202 => 'Breast',
(int) 203 => 'Colon',
(int) 204 => 'Heart',
(int) 205 => 'Kidney',
(int) 206 => 'Liver',
(int) 207 => 'Lung',
(int) 208 => 'Muscle',
(int) 209 => 'Ovary',
(int) 210 => 'Testis',
(int) 211 => 'Adipose',
(int) 212 => 'Bladder',
(int) 213 => 'Brain',
(int) 214 => 'Breast',
(int) 215 => 'Colon',
(int) 216 => 'Heart',
(int) 217 => 'Kidney',
(int) 218 => 'Liver',
(int) 219 => 'Lung',
(int) 220 => 'Muscle',
(int) 221 => 'Ovary',
(int) 222 => 'Placenta',
(int) 223 => 'Testis'
)
),
'CIL_0007LR_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000004637' => array(
[maximum depth reached]
),
'ENSMUSG00000089723' => array(
[maximum depth reached]
),
'ENSMUSG00000089797' => array(
[maximum depth reached]
),
'ENSMUSG00000090217' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Adrenal',
(int) 2 => 'Bladder',
(int) 3 => 'Brain',
(int) 4 => 'Breast',
(int) 5 => 'Colon',
(int) 6 => 'Heart',
(int) 7 => 'Kidney',
(int) 8 => 'Liver',
(int) 9 => 'Lung',
(int) 10 => 'Muscle',
(int) 11 => 'Ovary',
(int) 12 => 'Placenta',
(int) 13 => 'Testis',
(int) 14 => 'Breast',
(int) 15 => 'Colon',
(int) 16 => 'Kidney',
(int) 17 => 'Liver',
(int) 18 => 'Ovary',
(int) 19 => 'Placenta',
(int) 20 => 'Adipose',
(int) 21 => 'Bladder',
(int) 22 => 'Brain',
(int) 23 => 'Breast',
(int) 24 => 'Colon',
(int) 25 => 'Heart',
(int) 26 => 'Liver',
(int) 27 => 'Lung',
(int) 28 => 'Muscle',
(int) 29 => 'Ovary',
(int) 30 => 'Placenta',
(int) 31 => 'Testis',
(int) 32 => 'Adipose',
(int) 33 => 'Breast',
(int) 34 => 'Heart',
(int) 35 => 'Kidney',
(int) 36 => 'Liver',
(int) 37 => 'Lung',
(int) 38 => 'Ovary',
(int) 39 => 'Adrenal',
(int) 40 => 'Brain',
(int) 41 => 'Breast',
(int) 42 => 'Colon',
(int) 43 => 'Kidney',
(int) 44 => 'Ovary',
(int) 45 => 'Placenta',
(int) 46 => 'Testis',
(int) 47 => 'Adipose',
(int) 48 => 'Bladder',
(int) 49 => 'Muscle',
(int) 50 => 'Adipose',
(int) 51 => 'Adrenal',
(int) 52 => 'Bladder',
(int) 53 => 'Brain',
(int) 54 => 'Breast',
(int) 55 => 'Colon',
(int) 56 => 'Heart',
(int) 57 => 'Kidney',
(int) 58 => 'Liver',
(int) 59 => 'Lung',
(int) 60 => 'Muscle',
(int) 61 => 'Ovary',
(int) 62 => 'Placenta',
(int) 63 => 'Testis',
(int) 64 => 'Adipose',
(int) 65 => 'Adrenal',
(int) 66 => 'Bladder',
(int) 67 => 'Breast',
(int) 68 => 'Colon',
(int) 69 => 'Heart',
(int) 70 => 'Kidney',
(int) 71 => 'Liver',
(int) 72 => 'Lung',
(int) 73 => 'Ovary',
(int) 74 => 'Placenta',
(int) 75 => 'Testis'
)
),
'CIL_0007LR_0004' => array(
'genes_in_region' => array(
'ENSDARG00000007614' => array(
[maximum depth reached]
),
'ENSDARG00000082003' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Heart',
(int) 2 => 'Liver',
(int) 3 => 'Muscle',
(int) 4 => 'Brain',
(int) 5 => 'Heart',
(int) 6 => 'Liver',
(int) 7 => 'Brain',
(int) 8 => 'Heart',
(int) 9 => 'Kidney',
(int) 10 => 'Liver',
(int) 11 => 'Muscle',
(int) 12 => 'Brain'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007LR_0003',
'tax_id' => '7955',
'chromosome' => '18',
'seq_start' => '29655235',
'seq_end' => '29723783',
'region_length' => '68548',
'region_type' => 'UCNEbase',
'el_id' => 'WWOX'
)
)
$gene_el = array(
'ENSMUST00000159472' => array(
'Adipose' => array(
'average_FPKM' => '0.231',
'stddev_FPKM' => '0.08'
),
'Adrenal' => array(
'average_FPKM' => '0.161',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.355',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.346',
'stddev_FPKM' => '0.09'
),
'Colon' => array(
'average_FPKM' => '0.192',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.154',
'stddev_FPKM' => '0.06'
),
'Kidney' => array(
'average_FPKM' => '0.108',
'stddev_FPKM' => '0.01'
),
'Liver' => array(
'average_FPKM' => '0.451',
'stddev_FPKM' => '0.23'
),
'Lung' => array(
'average_FPKM' => '0.242',
'stddev_FPKM' => '0.08'
),
'Ovary' => array(
'average_FPKM' => '0.514',
'stddev_FPKM' => '0.27'
),
'Placenta' => array(
'average_FPKM' => '0.171',
'stddev_FPKM' => '0.07'
),
'Testis' => array(
'average_FPKM' => '0.165',
'stddev_FPKM' => '0.06'
)
)
)
$gene_key = 'ENSMUSG00000090217'
$is_first = false
$tran_el = array(
'Adipose' => array(
'average_FPKM' => '0.231',
'stddev_FPKM' => '0.08'
),
'Adrenal' => array(
'average_FPKM' => '0.161',
'stddev_FPKM' => '0.00'
),
'Bladder' => array(
'average_FPKM' => '0.355',
'stddev_FPKM' => '0.00'
),
'Breast' => array(
'average_FPKM' => '0.346',
'stddev_FPKM' => '0.09'
),
'Colon' => array(
'average_FPKM' => '0.192',
'stddev_FPKM' => '0.00'
),
'Heart' => array(
'average_FPKM' => '0.154',
'stddev_FPKM' => '0.06'
),
'Kidney' => array(
'average_FPKM' => '0.108',
'stddev_FPKM' => '0.01'
),
'Liver' => array(
'average_FPKM' => '0.451',
'stddev_FPKM' => '0.23'
),
'Lung' => array(
'average_FPKM' => '0.242',
'stddev_FPKM' => '0.08'
),
'Ovary' => array(
'average_FPKM' => '0.514',
'stddev_FPKM' => '0.27'
),
'Placenta' => array(
'average_FPKM' => '0.171',
'stddev_FPKM' => '0.07'
),
'Testis' => array(
'average_FPKM' => '0.165',
'stddev_FPKM' => '0.06'
)
)
$tran_key = 'ENSMUST00000159472'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
(WWOX)