Notice (8): Undefined index: CIL_0007PD_0003 [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007PD_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007PD_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000168875' => 'SRY (sex determining region Y)-box 14',
'ENSG00000201325' => 'RNA, 5S ribosomal pseudogene 142',
'ENSG00000239513' => 'long intergenic non-protein coding RNA 1210',
'ENSG00000242070' => 'nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 17',
'ENSG00000243886' => null,
'ENSMUSG00000053747' => 'SRY (sex determining region Y)-box 14',
'ENSMUSG00000077495' => 'predicted gene, 23594',
'ENSMUSG00000099631' => 'predicted gene 8641',
'ENSMUSG00000101042' => 'predicted gene 28167',
'ENSMUSG00000101584' => 'RIKEN cDNA 4930519F24 gene',
'ENSDARG00000084212' => '5S ribosomal RNA',
'ENSDARG00000097395' => 'si:ch211-214n22.1'
),
'gene_name_arr' => array(
'ENSG00000168875' => 'SOX14',
'ENSG00000201325' => 'RNA5SP142',
'ENSG00000239513' => 'LINC01210',
'ENSG00000242070' => 'NPM1P17',
'ENSG00000243886' => 'RP11-575C1.1',
'ENSMUSG00000053747' => 'Sox14',
'ENSMUSG00000077495' => 'Gm23594',
'ENSMUSG00000099631' => 'RP23-14N2.2',
'ENSMUSG00000101042' => 'RP24-294E6.1',
'ENSMUSG00000101584' => 'RP23-14N2.1',
'ENSDARG00000084212' => '5S_rRNA',
'ENSDARG00000097395' => 'si:ch211-214n22.1'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 7 => 'Breast',
(int) 10 => 'Colon',
(int) 11 => 'Heart',
(int) 13 => 'Kidney',
(int) 15 => 'Liver',
(int) 18 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 27 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 16,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000306087' => array(
'start' => '137764284',
'end' => '137766338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX14-001'
),
'ENST00000364455' => array(
'start' => '137518134',
'end' => '137518255',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP142-201'
),
'ENST00000465283' => array(
'start' => '137774541',
'end' => '137777596',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01210-003'
),
'ENST00000469216' => array(
'start' => '137774992',
'end' => '137777596',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01210-004'
),
'ENST00000471091' => array(
'start' => '137774544',
'end' => '137777596',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01210-002'
),
'ENST00000478772' => array(
'start' => '137771949',
'end' => '137780878',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01210-001'
),
'ENST00000479221' => array(
'start' => '137723774',
'end' => '137724543',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'NPM1P17-001'
),
'ENST00000474107' => array(
'start' => '137535572',
'end' => '137536142',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-575C1.1-001'
),
'ENSMUST00000054819' => array(
'start' => '99874106',
'end' => '99876170',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox14-001'
),
'ENSMUST00000183065' => array(
'start' => '99874220',
'end' => '99875655',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox14-002'
),
'ENSMUST00000104307' => array(
'start' => '99943709',
'end' => '99943842',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm23594-201'
),
'ENSMUST00000186995' => array(
'start' => '99946564',
'end' => '99947389',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP23-14N2.2-001'
),
'ENSMUST00000187644' => array(
'start' => '100321611',
'end' => '100323524',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-294E6.1-001'
),
'ENSMUST00000185764' => array(
'start' => '100022300',
'end' => '100034672',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-14N2.1-001'
),
'ENSDART00000119612' => array(
'start' => '26316977',
'end' => '26317091',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.568-201'
),
'ENSDART00000154043' => array(
'start' => '26362141',
'end' => '26415833',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-214n22.1-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007PD_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007PD_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007PD_0001' => array(
'genes_in_region' => array(
'ENSG00000168875' => array(
[maximum depth reached]
),
'ENSG00000201325' => array(
[maximum depth reached]
),
'ENSG00000239513' => array(
[maximum depth reached]
),
'ENSG00000242070' => array(
[maximum depth reached]
),
'ENSG00000243886' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Testis',
(int) 5 => 'Testis',
(int) 6 => 'Colon',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Testis',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Breast',
(int) 13 => 'Heart',
(int) 14 => 'Liver',
(int) 15 => 'Muscle',
(int) 16 => 'Testis'
)
),
'CIL_0007PD_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000053747' => array(
[maximum depth reached]
),
'ENSMUSG00000099631' => array(
[maximum depth reached]
),
'ENSMUSG00000101042' => array(
[maximum depth reached]
),
'ENSMUSG00000101584' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Breast',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Liver',
(int) 7 => 'Placenta',
(int) 8 => 'Adipose',
(int) 9 => 'Bladder',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Muscle',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Testis',
(int) 19 => 'Brain',
(int) 20 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000168875' => 'SRY (sex determining region Y)-box 14',
'ENSG00000201325' => 'RNA, 5S ribosomal pseudogene 142',
'ENSG00000239513' => 'long intergenic non-protein coding RNA 1210',
'ENSG00000242070' => 'nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 17',
'ENSG00000243886' => null,
'ENSMUSG00000053747' => 'SRY (sex determining region Y)-box 14',
'ENSMUSG00000077495' => 'predicted gene, 23594',
'ENSMUSG00000099631' => 'predicted gene 8641',
'ENSMUSG00000101042' => 'predicted gene 28167',
'ENSMUSG00000101584' => 'RIKEN cDNA 4930519F24 gene',
'ENSDARG00000084212' => '5S ribosomal RNA',
'ENSDARG00000097395' => 'si:ch211-214n22.1'
)
$gene_name_arr = array(
'ENSG00000168875' => 'SOX14',
'ENSG00000201325' => 'RNA5SP142',
'ENSG00000239513' => 'LINC01210',
'ENSG00000242070' => 'NPM1P17',
'ENSG00000243886' => 'RP11-575C1.1',
'ENSMUSG00000053747' => 'Sox14',
'ENSMUSG00000077495' => 'Gm23594',
'ENSMUSG00000099631' => 'RP23-14N2.2',
'ENSMUSG00000101042' => 'RP24-294E6.1',
'ENSMUSG00000101584' => 'RP23-14N2.1',
'ENSDARG00000084212' => '5S_rRNA',
'ENSDARG00000097395' => 'si:ch211-214n22.1'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007PD_0001',
'tax_id' => '9606',
'chromosome' => '3',
'seq_start' => '137186405',
'seq_end' => '137773237',
'region_length' => '586832',
'region_type' => 'UCNEbase',
'el_id' => 'SOX14'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007PD_0002',
'tax_id' => '10090',
'chromosome' => '9',
'seq_start' => '99867520',
'seq_end' => '100325644',
'region_length' => '458124',
'region_type' => 'UCNEbase',
'el_id' => 'SOX14'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007PD_0003',
'tax_id' => '7955',
'chromosome' => '6',
'seq_start' => '26299513',
'seq_end' => '26470955',
'region_length' => '171442',
'region_type' => 'UCNEbase',
'el_id' => 'SOX14'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 7 => 'Breast',
(int) 10 => 'Colon',
(int) 11 => 'Heart',
(int) 13 => 'Kidney',
(int) 15 => 'Liver',
(int) 18 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 27 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 16
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000306087' => array(
'start' => '137764284',
'end' => '137766338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX14-001'
),
'ENST00000364455' => array(
'start' => '137518134',
'end' => '137518255',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP142-201'
),
'ENST00000465283' => array(
'start' => '137774541',
'end' => '137777596',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01210-003'
),
'ENST00000469216' => array(
'start' => '137774992',
'end' => '137777596',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01210-004'
),
'ENST00000471091' => array(
'start' => '137774544',
'end' => '137777596',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01210-002'
),
'ENST00000478772' => array(
'start' => '137771949',
'end' => '137780878',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01210-001'
),
'ENST00000479221' => array(
'start' => '137723774',
'end' => '137724543',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'NPM1P17-001'
),
'ENST00000474107' => array(
'start' => '137535572',
'end' => '137536142',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-575C1.1-001'
),
'ENSMUST00000054819' => array(
'start' => '99874106',
'end' => '99876170',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox14-001'
),
'ENSMUST00000183065' => array(
'start' => '99874220',
'end' => '99875655',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox14-002'
),
'ENSMUST00000104307' => array(
'start' => '99943709',
'end' => '99943842',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm23594-201'
),
'ENSMUST00000186995' => array(
'start' => '99946564',
'end' => '99947389',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP23-14N2.2-001'
),
'ENSMUST00000187644' => array(
'start' => '100321611',
'end' => '100323524',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-294E6.1-001'
),
'ENSMUST00000185764' => array(
'start' => '100022300',
'end' => '100034672',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-14N2.1-001'
),
'ENSDART00000119612' => array(
'start' => '26316977',
'end' => '26317091',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.568-201'
),
'ENSDART00000154043' => array(
'start' => '26362141',
'end' => '26415833',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-214n22.1-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007PD_0001' => array(
'genes_in_region' => array(
'ENSG00000168875' => array(
[maximum depth reached]
),
'ENSG00000201325' => array(
[maximum depth reached]
),
'ENSG00000239513' => array(
[maximum depth reached]
),
'ENSG00000242070' => array(
[maximum depth reached]
),
'ENSG00000243886' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Testis',
(int) 5 => 'Testis',
(int) 6 => 'Colon',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Testis',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Breast',
(int) 13 => 'Heart',
(int) 14 => 'Liver',
(int) 15 => 'Muscle',
(int) 16 => 'Testis'
)
),
'CIL_0007PD_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000053747' => array(
[maximum depth reached]
),
'ENSMUSG00000099631' => array(
[maximum depth reached]
),
'ENSMUSG00000101042' => array(
[maximum depth reached]
),
'ENSMUSG00000101584' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Breast',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Liver',
(int) 7 => 'Placenta',
(int) 8 => 'Adipose',
(int) 9 => 'Bladder',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Muscle',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Testis',
(int) 19 => 'Brain',
(int) 20 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007PD_0003',
'tax_id' => '7955',
'chromosome' => '6',
'seq_start' => '26299513',
'seq_end' => '26470955',
'region_length' => '171442',
'region_type' => 'UCNEbase',
'el_id' => 'SOX14'
)
)
$gene_el = array(
'ENSMUST00000185764' => array(
'Brain' => array(
'average_FPKM' => '0.018',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '4.493',
'stddev_FPKM' => '4.85'
)
)
)
$gene_key = 'ENSMUSG00000101584'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.018',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '4.493',
'stddev_FPKM' => '4.85'
)
)
$tran_key = 'ENSMUST00000185764'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
Warning (2): Invalid argument supplied for foreach() [APP/View/Region/show.ctp, line 46]Code Context <tr><th colspan="2">Gene</th><th>Transcript</th><th>Position</th><th>Biotype</th></tr>
<?php foreach ($region_arr[$accession["region_elements"]["region_element_id"]]['genes_in_region'] as $gene_key => $gene_el): ?>
$viewFile = '/var/www/c-it-loci/app/View/Region/show.ctp'
$dataForView = array(
'region_arr' => array(
'CIL_0007PD_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007PD_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
),
'gene_desc_arr' => array(
'ENSG00000168875' => 'SRY (sex determining region Y)-box 14',
'ENSG00000201325' => 'RNA, 5S ribosomal pseudogene 142',
'ENSG00000239513' => 'long intergenic non-protein coding RNA 1210',
'ENSG00000242070' => 'nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 17',
'ENSG00000243886' => null,
'ENSMUSG00000053747' => 'SRY (sex determining region Y)-box 14',
'ENSMUSG00000077495' => 'predicted gene, 23594',
'ENSMUSG00000099631' => 'predicted gene 8641',
'ENSMUSG00000101042' => 'predicted gene 28167',
'ENSMUSG00000101584' => 'RIKEN cDNA 4930519F24 gene',
'ENSDARG00000084212' => '5S ribosomal RNA',
'ENSDARG00000097395' => 'si:ch211-214n22.1'
),
'gene_name_arr' => array(
'ENSG00000168875' => 'SOX14',
'ENSG00000201325' => 'RNA5SP142',
'ENSG00000239513' => 'LINC01210',
'ENSG00000242070' => 'NPM1P17',
'ENSG00000243886' => 'RP11-575C1.1',
'ENSMUSG00000053747' => 'Sox14',
'ENSMUSG00000077495' => 'Gm23594',
'ENSMUSG00000099631' => 'RP23-14N2.2',
'ENSMUSG00000101042' => 'RP24-294E6.1',
'ENSMUSG00000101584' => 'RP23-14N2.1',
'ENSDARG00000084212' => '5S_rRNA',
'ENSDARG00000097395' => 'si:ch211-214n22.1'
),
'accession_table' => array(
(int) 0 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 1 => array(
'region_elements' => array(
[maximum depth reached]
)
),
(int) 2 => array(
'region_elements' => array(
[maximum depth reached]
)
)
),
'all_tissues' => array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 7 => 'Breast',
(int) 10 => 'Colon',
(int) 11 => 'Heart',
(int) 13 => 'Kidney',
(int) 15 => 'Liver',
(int) 18 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 27 => 'Testis'
),
'column_titles' => array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
),
'geneviewer' => array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
),
'transcript_count' => (int) 16,
'longest_tissue_len' => (int) 8,
'transcript_data' => array(
'ENST00000306087' => array(
'start' => '137764284',
'end' => '137766338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX14-001'
),
'ENST00000364455' => array(
'start' => '137518134',
'end' => '137518255',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP142-201'
),
'ENST00000465283' => array(
'start' => '137774541',
'end' => '137777596',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01210-003'
),
'ENST00000469216' => array(
'start' => '137774992',
'end' => '137777596',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01210-004'
),
'ENST00000471091' => array(
'start' => '137774544',
'end' => '137777596',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01210-002'
),
'ENST00000478772' => array(
'start' => '137771949',
'end' => '137780878',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01210-001'
),
'ENST00000479221' => array(
'start' => '137723774',
'end' => '137724543',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'NPM1P17-001'
),
'ENST00000474107' => array(
'start' => '137535572',
'end' => '137536142',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-575C1.1-001'
),
'ENSMUST00000054819' => array(
'start' => '99874106',
'end' => '99876170',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox14-001'
),
'ENSMUST00000183065' => array(
'start' => '99874220',
'end' => '99875655',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox14-002'
),
'ENSMUST00000104307' => array(
'start' => '99943709',
'end' => '99943842',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm23594-201'
),
'ENSMUST00000186995' => array(
'start' => '99946564',
'end' => '99947389',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP23-14N2.2-001'
),
'ENSMUST00000187644' => array(
'start' => '100321611',
'end' => '100323524',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-294E6.1-001'
),
'ENSMUST00000185764' => array(
'start' => '100022300',
'end' => '100034672',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-14N2.1-001'
),
'ENSDART00000119612' => array(
'start' => '26316977',
'end' => '26317091',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.568-201'
),
'ENSDART00000154043' => array(
'start' => '26362141',
'end' => '26415833',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-214n22.1-001'
)
),
'accession_map' => array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
),
'sci_name_map' => array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
),
'UCSC_links' => array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
),
'expressed_region_arr' => array(
'CIL_0007PD_0001' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
),
'CIL_0007PD_0002' => array(
'genes_in_region' => array(
[maximum depth reached]
),
'tissues_title' => array(
[maximum depth reached]
)
)
)
)
$region_arr = array(
'CIL_0007PD_0001' => array(
'genes_in_region' => array(
'ENSG00000168875' => array(
[maximum depth reached]
),
'ENSG00000201325' => array(
[maximum depth reached]
),
'ENSG00000239513' => array(
[maximum depth reached]
),
'ENSG00000242070' => array(
[maximum depth reached]
),
'ENSG00000243886' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Testis',
(int) 5 => 'Testis',
(int) 6 => 'Colon',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Testis',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Breast',
(int) 13 => 'Heart',
(int) 14 => 'Liver',
(int) 15 => 'Muscle',
(int) 16 => 'Testis'
)
),
'CIL_0007PD_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000053747' => array(
[maximum depth reached]
),
'ENSMUSG00000099631' => array(
[maximum depth reached]
),
'ENSMUSG00000101042' => array(
[maximum depth reached]
),
'ENSMUSG00000101584' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Breast',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Liver',
(int) 7 => 'Placenta',
(int) 8 => 'Adipose',
(int) 9 => 'Bladder',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Muscle',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Testis',
(int) 19 => 'Brain',
(int) 20 => 'Testis'
)
)
)
$gene_desc_arr = array(
'ENSG00000168875' => 'SRY (sex determining region Y)-box 14',
'ENSG00000201325' => 'RNA, 5S ribosomal pseudogene 142',
'ENSG00000239513' => 'long intergenic non-protein coding RNA 1210',
'ENSG00000242070' => 'nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 17',
'ENSG00000243886' => null,
'ENSMUSG00000053747' => 'SRY (sex determining region Y)-box 14',
'ENSMUSG00000077495' => 'predicted gene, 23594',
'ENSMUSG00000099631' => 'predicted gene 8641',
'ENSMUSG00000101042' => 'predicted gene 28167',
'ENSMUSG00000101584' => 'RIKEN cDNA 4930519F24 gene',
'ENSDARG00000084212' => '5S ribosomal RNA',
'ENSDARG00000097395' => 'si:ch211-214n22.1'
)
$gene_name_arr = array(
'ENSG00000168875' => 'SOX14',
'ENSG00000201325' => 'RNA5SP142',
'ENSG00000239513' => 'LINC01210',
'ENSG00000242070' => 'NPM1P17',
'ENSG00000243886' => 'RP11-575C1.1',
'ENSMUSG00000053747' => 'Sox14',
'ENSMUSG00000077495' => 'Gm23594',
'ENSMUSG00000099631' => 'RP23-14N2.2',
'ENSMUSG00000101042' => 'RP24-294E6.1',
'ENSMUSG00000101584' => 'RP23-14N2.1',
'ENSDARG00000084212' => '5S_rRNA',
'ENSDARG00000097395' => 'si:ch211-214n22.1'
)
$accession_table = array(
(int) 0 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007PD_0001',
'tax_id' => '9606',
'chromosome' => '3',
'seq_start' => '137186405',
'seq_end' => '137773237',
'region_length' => '586832',
'region_type' => 'UCNEbase',
'el_id' => 'SOX14'
)
),
(int) 1 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007PD_0002',
'tax_id' => '10090',
'chromosome' => '9',
'seq_start' => '99867520',
'seq_end' => '100325644',
'region_length' => '458124',
'region_type' => 'UCNEbase',
'el_id' => 'SOX14'
)
),
(int) 2 => array(
'region_elements' => array(
'region_element_id' => 'CIL_0007PD_0003',
'tax_id' => '7955',
'chromosome' => '6',
'seq_start' => '26299513',
'seq_end' => '26470955',
'region_length' => '171442',
'region_type' => 'UCNEbase',
'el_id' => 'SOX14'
)
)
)
$all_tissues = array(
(int) 0 => 'Adipose',
(int) 1 => 'Bladder',
(int) 2 => 'Brain',
(int) 7 => 'Breast',
(int) 10 => 'Colon',
(int) 11 => 'Heart',
(int) 13 => 'Kidney',
(int) 15 => 'Liver',
(int) 18 => 'Muscle',
(int) 20 => 'Ovary',
(int) 21 => 'Placenta',
(int) 27 => 'Testis'
)
$column_titles = array(
(int) 0 => 'Region Sub-Accession',
(int) 1 => 'Tax ID',
(int) 2 => 'Position',
(int) 3 => 'Region Length'
)
$geneviewer = array(
(int) 9606 => array(
'version' => 'GRCh38',
'coord_key' => 'Homo sapiens',
'reference_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.reference',
'gene_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Homo_sapiens.GRCh38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCh38.2bit',
'bwgURI' => '/static/files/GRCh38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 10090 => array(
'version' => 'GRCm38',
'coord_key' => 'Mus musculus',
'reference_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.reference',
'gene_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.gene',
'transcript_url' => 'http://www.ensembl.org/das/Mus_musculus.GRCm38.transcript',
'desc' => 'Gene structures from GENCODE 19',
'twoBitURI' => '/static/files/GRCm38.2bit',
'bwgURI' => '/static/files/GRCm38.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
),
(int) 7955 => array(
'version' => 'Zv9',
'coord_key' => 'Danio rerio',
'reference_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.reference',
'gene_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.gene',
'transcript_url' => 'http://www.ensembl.org/das/Danio_rerio.Zv9.transcript',
'twoBitURI' => '/static/files/Zv9.2bit',
'bwgURI' => '/static/files/Zv9.77.bb',
'stylesheet_uri' => '/static/files/gencode.xml',
'collapseSuperGroups' => 'true',
'trixURI' => '//www.biodalliance.org/datasets/geneIndex.ix'
)
)
$transcript_count = (int) 16
$longest_tissue_len = (int) 8
$transcript_data = array(
'ENST00000306087' => array(
'start' => '137764284',
'end' => '137766338',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'SOX14-001'
),
'ENST00000364455' => array(
'start' => '137518134',
'end' => '137518255',
'transcript_biotype' => 'rRNA',
'transcript_name' => 'RNA5SP142-201'
),
'ENST00000465283' => array(
'start' => '137774541',
'end' => '137777596',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01210-003'
),
'ENST00000469216' => array(
'start' => '137774992',
'end' => '137777596',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01210-004'
),
'ENST00000471091' => array(
'start' => '137774544',
'end' => '137777596',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01210-002'
),
'ENST00000478772' => array(
'start' => '137771949',
'end' => '137780878',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'LINC01210-001'
),
'ENST00000479221' => array(
'start' => '137723774',
'end' => '137724543',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'NPM1P17-001'
),
'ENST00000474107' => array(
'start' => '137535572',
'end' => '137536142',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP11-575C1.1-001'
),
'ENSMUST00000054819' => array(
'start' => '99874106',
'end' => '99876170',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox14-001'
),
'ENSMUST00000183065' => array(
'start' => '99874220',
'end' => '99875655',
'transcript_biotype' => 'protein_coding',
'transcript_name' => 'Sox14-002'
),
'ENSMUST00000104307' => array(
'start' => '99943709',
'end' => '99943842',
'transcript_biotype' => 'snoRNA',
'transcript_name' => 'Gm23594-201'
),
'ENSMUST00000186995' => array(
'start' => '99946564',
'end' => '99947389',
'transcript_biotype' => 'processed_pseudogene',
'transcript_name' => 'RP23-14N2.2-001'
),
'ENSMUST00000187644' => array(
'start' => '100321611',
'end' => '100323524',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP24-294E6.1-001'
),
'ENSMUST00000185764' => array(
'start' => '100022300',
'end' => '100034672',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'RP23-14N2.1-001'
),
'ENSDART00000119612' => array(
'start' => '26316977',
'end' => '26317091',
'transcript_biotype' => 'rRNA',
'transcript_name' => '5S_rRNA.568-201'
),
'ENSDART00000154043' => array(
'start' => '26362141',
'end' => '26415833',
'transcript_biotype' => 'lincRNA',
'transcript_name' => 'si:ch211-214n22.1-001'
)
)
$accession_map = array(
'ENST000' => '9606',
'ENSMUST' => '10090',
'ENSDART' => '7955',
'ENSG000' => '9606',
'ENSMUSG' => '10090',
'ENSDARG' => '7955'
)
$sci_name_map = array(
(int) 9606 => 'Homo_sapiens',
(int) 10090 => 'Mus_musculus',
(int) 7955 => 'Danio_rerio'
)
$UCSC_links = array(
(int) 7955 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=danRer7&position=',
(int) 9606 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=hg38&position=',
(int) 10090 => 'http://genome.ucsc.edu/cgi-bin/hgTracks?db=mm10&position='
)
$expressed_region_arr = array(
'CIL_0007PD_0001' => array(
'genes_in_region' => array(
'ENSG00000168875' => array(
[maximum depth reached]
),
'ENSG00000201325' => array(
[maximum depth reached]
),
'ENSG00000239513' => array(
[maximum depth reached]
),
'ENSG00000242070' => array(
[maximum depth reached]
),
'ENSG00000243886' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Kidney',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Testis',
(int) 5 => 'Testis',
(int) 6 => 'Colon',
(int) 7 => 'Placenta',
(int) 8 => 'Testis',
(int) 9 => 'Testis',
(int) 10 => 'Placenta',
(int) 11 => 'Testis',
(int) 12 => 'Breast',
(int) 13 => 'Heart',
(int) 14 => 'Liver',
(int) 15 => 'Muscle',
(int) 16 => 'Testis'
)
),
'CIL_0007PD_0002' => array(
'genes_in_region' => array(
'ENSMUSG00000053747' => array(
[maximum depth reached]
),
'ENSMUSG00000099631' => array(
[maximum depth reached]
),
'ENSMUSG00000101042' => array(
[maximum depth reached]
),
'ENSMUSG00000101584' => array(
[maximum depth reached]
)
),
'tissues_title' => array(
(int) 0 => 'Brain',
(int) 1 => 'Breast',
(int) 2 => 'Placenta',
(int) 3 => 'Testis',
(int) 4 => 'Brain',
(int) 5 => 'Breast',
(int) 6 => 'Liver',
(int) 7 => 'Placenta',
(int) 8 => 'Adipose',
(int) 9 => 'Bladder',
(int) 10 => 'Brain',
(int) 11 => 'Heart',
(int) 12 => 'Kidney',
(int) 13 => 'Liver',
(int) 14 => 'Muscle',
(int) 15 => 'Ovary',
(int) 16 => 'Placenta',
(int) 17 => 'Testis',
(int) 18 => 'Testis',
(int) 19 => 'Brain',
(int) 20 => 'Testis'
)
)
)
$accession = array(
'region_elements' => array(
'region_element_id' => 'CIL_0007PD_0003',
'tax_id' => '7955',
'chromosome' => '6',
'seq_start' => '26299513',
'seq_end' => '26470955',
'region_length' => '171442',
'region_type' => 'UCNEbase',
'el_id' => 'SOX14'
)
)
$gene_el = array(
'ENSMUST00000185764' => array(
'Brain' => array(
'average_FPKM' => '0.018',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '4.493',
'stddev_FPKM' => '4.85'
)
)
)
$gene_key = 'ENSMUSG00000101584'
$is_first = false
$tran_el = array(
'Brain' => array(
'average_FPKM' => '0.018',
'stddev_FPKM' => '0.00'
),
'Testis' => array(
'average_FPKM' => '4.493',
'stddev_FPKM' => '4.85'
)
)
$tran_key = 'ENSMUST00000185764'
include - APP/View/Region/show.ctp, line 46
View::_evaluate() - CORE/Cake/View/View.php, line 948
View::_render() - CORE/Cake/View/View.php, line 910
View::render() - CORE/Cake/View/View.php, line 471
Controller::render() - CORE/Cake/Controller/Controller.php, line 954
Dispatcher::_invoke() - CORE/Cake/Routing/Dispatcher.php, line 198
Dispatcher::dispatch() - CORE/Cake/Routing/Dispatcher.php, line 165
[main] - APP/webroot/index.php, line 108
| Source ID |
Type |
Tax ID |
Position |
| SOX14 |
UCNEbase |
7955 |
6:26299513-26470955  |
| Gene | Transcript | Position | Biotype |
|---|
(SOX14)