C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 14
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000306087 SOX14-001 ENSG00000168875 9606 + 3:137764284-137766338 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyPlacentaTestisENST00000306087
Transcript ID Brain Kidney Placenta Testis
ENST00000306087 0.067±0.00 0.033±0.00 2.787±0.74 0.048±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081U CIL_00081U_0001 VISTA 3:137167122-137768024
CIL_0007PD CIL_0007PD_0001 UCNEbase 3:137186405-137773237
CIL_0008R7 CIL_0008R7_0001 VISTA 3:137341981-137943122
CIL_0007YL CIL_0007YL_0001 VISTA 3:137620069-138221266

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IEA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003682 IEA chromatin binding
GO:0005575 ND cellular_component
GO:0006366 IEA transcription from RNA polymerase II promoter
GO:0007399 TAS nervous system development
GO:0007601 IEA visual perception
GO:0009649 IEA entrainment of circadian clock
GO:0043565 ISS sequence-specific DNA binding
GO:0044798 IEA nuclear transcription factor complex
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0046982 IEA protein heterodimerization activity
GO:2001222 IEA regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054819 Sox14-001 protein_coding Mus_musculus 0 2231
ENSMUST00000183065 Sox14-002 protein_coding Mus_musculus 0 1022
ENSMUST00000170662 Sox21-001 protein_coding Mus_musculus 0 307
ENSMUST00000180353 Sox1-001 protein_coding Mus_musculus 0 302
ENSMUST00000099151 Sox2-001 protein_coding Mus_musculus 0 270

Loading