C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SRY (sex determining region Y)-box 14
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054819 Sox14-001 ENSMUSG00000053747 10090 - 9:99874106-99876170 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastPlacentaTestisENSMUST00000054819
Transcript ID Brain Breast Placenta Testis
ENSMUST00000054819 7.147±4.97 0.092±0.03 0.003±0.00 0.160±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YL CIL_0007YL_0002 VISTA 9:99473254-100074438
CIL_0008R7 CIL_0008R7_0002 VISTA 9:99694345-100295440
CIL_00081U CIL_00081U_0002 VISTA 9:99830871-100431770
CIL_00092H CIL_00092H_0002 VISTA 9:99866422-100468225
CIL_0007PD CIL_0007PD_0002 UCNEbase 9:99867520-100325644

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0003682 IDA chromatin binding
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0007601 IMP visual perception
GO:0009649 IMP entrainment of circadian clock
GO:0043565 ISS sequence-specific DNA binding
GO:0044798 IDA nuclear transcription factor complex
GO:0045892 ISS negative regulation of transcription, DNA-templated
GO:0046982 IDA protein heterodimerization activity
GO:2001222 IMP regulation of neuron migration

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306087 SOX14-001 protein_coding Homo_sapiens 0 2231
ENST00000325404 SOX2-001 protein_coding Homo_sapiens 0 248
ENST00000330949 SOX1-001 protein_coding Homo_sapiens 0 302
ENST00000376945 SOX21-001 protein_coding Homo_sapiens 0 302

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